MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:380.1 nTPM
HPA Brain:98.0 nTPM
GTEx:380.1 nTPM
FANTOM5:245.6 Scaled Tags Per Million
Pig:53.4 nTPM
Mouse:1041.5 nTPM
Allen mouse:5.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 98.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 66.4
2019 Male, age 18, unknown 94.9
2411 Female, age 72, unknown 82.7
1827 Male, age 72, unknown 76.2
1870 Female, age 42, unknown 70.2
2828 Female, age 72, unknown 67.2
2666 Male, age 74, left hemisphere 62.9
1830 Male, age 51, unknown 59.3
2219 Male, age 76, both hemispheres 55.6
1833 Male, age 53, unknown 55.1
2586 Male, age 75, left hemisphere 40.0
Dorsal raphe nucleus
nTPM: 75.5
2298 Female, age 72, unknown 99.2
2750 Male, age 76, both hemispheres 82.5
2047 Male, age 72, unknown 70.5
1828 Male, age 53, unknown 66.1
2016 Female, age 72, unknown 59.4
Inferior colliculus
nTPM: 74.3
2097 Female, age 72, unknown 93.6
1890 Male, age 53, unknown 82.1
1848 Female, age 42, unknown 67.2
2849 Male, age 72, unknown 54.4
Median raphe nucleus
nTPM: 89.8
2220 Male, age 76, midline 89.8
Periaquaductal grey, anterior
nTPM: 68.4
2502 Female, age 75, unknown 82.6
1947 Male, age 18, unknown 65.9
1795 Male, age 51, unknown 56.7
Periaquaductal grey, dorsal
nTPM: 64.1
1840 Male, age 53, unknown 69.4
2464 Female, age 72, unknown 65.1
2850 Male, age 76, both hemispheres 62.8
1831 Male, age 72, unknown 59.2
Periaquaductal grey, lateral
nTPM: 64.9
2272 Male, age 74, both hemispheres 76.3
2053 Male, age 18, unknown 65.9
2140 Male, age 76, both hemispheres 52.6
Pretectal area
nTPM: 80.9
2007 Male, age 72, unknown 103.3
1816 Male, age 51, unknown 99.6
2273 Male, age 74, both hemispheres 89.4
1817 Female, age 42, unknown 87.9
1944 Female, age 72, unknown 85.6
1815 Male, age 53, unknown 84.6
2667 Female, age 75, unknown 81.6
2316 Male, age 76, right hemisphere 73.7
2224 Female, age 72, unknown 66.3
2825 Male, age 18, unknown 65.5
2407 Male, age 75, both hemispheres 52.1
Red nucleus
nTPM: 77.5
1821 Female, age 72, unknown 105.5
2503 Female, age 72, unknown 90.3
1865 Male, age 51, unknown 86.6
1904 Male, age 53, unknown 82.3
1954 Female, age 42, unknown 81.7
2725 Female, age 75, unknown 77.5
2823 Male, age 76, right hemisphere 77.3
2785 Male, age 18, unknown 76.6
2227 Male, age 72, unknown 70.8
2769 Male, age 72, unknown 67.7
2588 Male, age 74, left hemisphere 57.7
2584 Male, age 75, left hemisphere 55.8
Substantia nigra
nTPM: 98.0
2241 Male, age 72, unknown 137.2
2409 Female, age 72, unknown 129.9
1916 Female, age 42, unknown 116.1
1941 Male, age 53, unknown 107.0
1851 Male, age 51, unknown 104.5
1889 Female, age 72, unknown 101.5
2665 Male, age 74, both hemispheres 82.7
2699 Male, age 18, unknown 72.2
2590 Female, age 75, unknown 70.8
2583 Male, age 75, right hemisphere 58.2
Superior colliculus
nTPM: 66.7
2087 Female, age 72, unknown 92.6
1895 Male, age 76, right hemisphere 73.5
2587 Male, age 74, left hemisphere 72.1
2261 Male, age 18, unknown 71.1
2668 Female, age 75, unknown 69.2
1796 Male, age 53, unknown 68.9
1913 Female, age 42, unknown 58.6
1839 Male, age 51, unknown 55.3
1995 Male, age 72, unknown 54.9
2664 Male, age 75, both hemispheres 51.0
Ventral tegmental area
nTPM: 85.8
2410 Female, age 72, unknown 103.3
1915 Female, age 42, unknown 97.2
1942 Male, age 51, unknown 83.7
2218 Male, age 76, both hemispheres 81.8
2223 Female, age 72, unknown 81.1
2021 Male, age 53, unknown 67.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 380.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 380.1
Samples: 139

Max nTPM: 1168.3
Min nTPM: 80.6
Std nTPM: 148.4
Median nTPM: 347.9
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 1168.3
GTEX-13FXS-0011-R2b-SM-5K7XX 50-59 years, male 762.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 738.1
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 727.4
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 712.5
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 690.6
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 685.3
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 659.7
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 634.2
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 618.0
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 590.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 245.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 245.6
FF:10158-103A5 76 years, female 245.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 53.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 44.3
Samples: 4

Max nTPM: 63.9
Min nTPM: 32.2
Sample A Female 63.9
Sample B Female 38.1
Sample C Male 43.0
Sample D Male 32.2
Midbrain
nTPM: 49.8
Samples: 4

Max nTPM: 57.0
Min nTPM: 42.0
Sample A Female 57.0
Sample B Female 46.8
Sample C Male 53.2
Sample D Male 42.0
Periaqueductal gray
nTPM: 37.8
Samples: 3

Max nTPM: 42.5
Min nTPM: 32.7
Sample B Female 38.1
Sample C Male 42.5
Sample D Male 32.7
Superior colliculi
nTPM: 53.4
Samples: 4

Max nTPM: 61.2
Min nTPM: 43.5
Sample A Female 61.2
Sample B Female 49.5
Sample C Male 59.3
Sample D Male 43.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 1041.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 1041.6
Samples: 4

Max nTPM: 1114.5
Min nTPM: 973.6
Sample A Male 1114.5
Sample B Male 996.6
Sample C Female 973.6
Sample D Female 1081.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 5.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 5.7
74641307 Antisense, RP_060220_05_H03, Mouse strain C57BL/6J (56 days, male) 6.9
71280952 Antisense, RP_050818_01_H08, Mouse strain C57BL/6J (56 days, male) 4.5

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