HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: High
RNA expressioni
Consensus:358.2 nTPM
HPA Brain:102.6 nTPM
GTEx:358.2 nTPM
FANTOM5:482.0 Scaled Tags Per Million
Pig:48.1 nTPM
Mouse:1058.9 nTPM
Allen mouse:7.0 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA014295Antibody CAB016244
Glial cells Not detectedLow
Neuronal cells HighHigh





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 102.6
Sample id Sample description nTPM
Hippocampus
nTPM: 81.4
1898 Male, age 80, left hemisphere 109.9
1855 Male, age 76, left hemisphere 82.4
2529 Female, age 94, left hemisphere 80.6
1911 Female, age 85, right hemisphere 74.2
2148 Female, age 91, left hemisphere 73.3
2621 Female, age 67, right hemisphere 67.9
Dentate gyrus
nTPM: 79.5
2530 Female, age 94, left hemisphere 96.7
1927 Female, age 91, both hemispheres 95.4
2010 Male, age 76, both hemispheres 84.1
2246 Female, age 85, both hemispheres 70.8
2528 Male, age 74, both hemispheres 65.2
2531 Female, age 67, both hemispheres 65.0
Entorhinal gyrus
nTPM: 69.5
1938 Female, age 85, left hemisphere 89.3
2764 Male, age 80, right hemisphere 84.6
2117 Female, age 91, right hemisphere 67.7
1787 Male, age 76, left hemisphere 65.6
2686 Male, age 75, right hemisphere 61.6
2613 Female, age 94, left hemisphere 48.6
Hippocampus, CA1
nTPM: 102.6
2749 Male, age 80, left hemisphere 166.1
1873 Female, age 85, both hemispheres 99.5
2527 Male, age 74, both hemispheres 96.0
2082 Female, age 91, right hemisphere 78.2
2045 Male, age 76, both hemispheres 73.3
Hippocampus, CA2
nTPM: 92.7
1892 Male, age 76, both hemispheres 115.4
2249 Male, age 74, both hemispheres 108.3
1963 Male, age 80, left hemisphere 93.6
2437 Female, age 94, left hemisphere 84.9
2113 Female, age 91, right hemisphere 82.6
1940 Female, age 85, left hemisphere 71.3
Hippocampus, CA3
nTPM: 89.5
2436 Male, age 74, both hemispheres 132.1
2137 Male, age 80, left hemisphere 115.0
1867 Male, age 76, both hemispheres 97.1
1891 Female, age 85, both hemispheres 76.6
2861 Female, age 67, both hemispheres 69.8
2620 Female, age 94, left hemisphere 46.5
Parahippocampal cortex
nTPM: 75.5
2250 Female, age 67, right hemisphere 101.1
2245 Female, age 91, both hemispheres 97.2
2018 Male, age 76, both hemispheres 89.3
1850 Male, age 80, both hemispheres 86.5
1990 Female, age 91, right hemisphere 78.5
1933 Female, age 85, both hemispheres 78.1
2532 Female, age 72, left hemisphere 63.9
2622 Female, age 67, right hemisphere 59.6
2693 Female, age 94, both hemispheres 56.3
2692 Male, age 74, both hemispheres 44.1
Perirhinal gyrus
nTPM: 82.6
2521 Female, age 94, right hemisphere 94.1
1841 Female, age 85, right hemisphere 88.3
1847 Female, age 91, left hemisphere 87.9
1794 Male, age 80, right hemisphere 80.1
2848 Male, age 76, right hemisphere 62.4
Subiculum
nTPM: 67.6
1901 Male, age 80, both hemispheres 83.2
1977 Female, age 85, both hemispheres 73.7
2042 Male, age 76, both hemispheres 72.6
2729 Female, age 91, right hemisphere 70.1
2438 Female, age 94, left hemisphere 63.8
2619 Male, age 74, both hemispheres 42.1

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 358.2
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 358.2
Samples: 197

Max nTPM: 1252.9
Min nTPM: 98.3
Std nTPM: 164.6
Median nTPM: 334.4
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 1252.9
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 887.9
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 781.8
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 775.2
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 728.2
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 724.9
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 710.1
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 688.4
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 684.0
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 675.2
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 669.5
Show allShow less

HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 482.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 482.0
FF:10169-103B7 60 years, female 691.6
FF:10153-102I9 76 years, female 272.3

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 48.1
Pig sample Sample description nTPM
Subiculum
nTPM: 41.6
Samples: 4

Max nTPM: 56.2
Min nTPM: 34.6
Sample A Female 56.2
Sample B Female 40.2
Sample C Male 35.3
Sample D Male 34.6
Dorsal hippocampus
nTPM: 44.4
Samples: 4

Max nTPM: 58.2
Min nTPM: 30.6
Sample A Female 58.2
Sample B Female 38.9
Sample C Male 49.8
Sample D Male 30.6
Entorhinal cortex
nTPM: 48.2
Samples: 4

Max nTPM: 62.8
Min nTPM: 36.8
Sample A Female 45.1
Sample B Female 62.8
Sample C Male 47.9
Sample D Male 36.8
Ventral hippocampus
nTPM: 35.6
Samples: 4

Max nTPM: 39.1
Min nTPM: 33.5
Sample A Female 39.1
Sample B Female 33.8
Sample C Male 33.5
Sample D Male 35.8

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 1058.9
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 1058.9
Samples: 4

Max nTPM: 1145.0
Min nTPM: 1004.7
Sample A Male 1016.8
Sample B Male 1069.1
Sample C Female 1145.0
Sample D Female 1004.7
Hippocampal formation
nTPM: 1053.7
Samples: 4

Max nTPM: 1169.2
Min nTPM: 979.8
Sample A Male 1169.2
Sample B Male 979.8
Sample C Female 1070.5
Sample D Female 995.1

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 7.0
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 7.0
74641307 Antisense, RP_060220_05_H03, Mouse strain C57BL/6J (56 days, male) 8.3
71280952 Antisense, RP_050818_01_H08, Mouse strain C57BL/6J (56 days, male) 5.7

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org