MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:75.4 nTPM
HPA Brain:152.8 nTPM
GTEx:75.4 nTPM
FANTOM5:182.5 Scaled Tags Per Million
Pig:61.2 nTPM
Mouse:90.2 nTPM
Allen mouse:2.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 152.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 141.6
2586 Male, age 75, left hemisphere 213.1
2666 Male, age 74, left hemisphere 207.5
2828 Female, age 72, unknown 134.7
2219 Male, age 76, both hemispheres 132.6
1833 Male, age 53, unknown 125.4
1827 Male, age 72, unknown 125.0
2019 Male, age 18, unknown 123.0
1870 Female, age 42, unknown 120.5
1830 Male, age 51, unknown 118.2
2411 Female, age 72, unknown 116.1
Dorsal raphe nucleus
nTPM: 132.4
2047 Male, age 72, unknown 160.5
2750 Male, age 76, both hemispheres 142.6
1828 Male, age 53, unknown 135.2
2016 Female, age 72, unknown 116.3
2298 Female, age 72, unknown 107.3
Inferior colliculus
nTPM: 113.0
2849 Male, age 72, unknown 118.2
1890 Male, age 53, unknown 116.2
1848 Female, age 42, unknown 114.8
2097 Female, age 72, unknown 103.0
Median raphe nucleus
nTPM: 140.3
2220 Male, age 76, midline 140.3
Periaquaductal grey, anterior
nTPM: 128.1
1947 Male, age 18, unknown 142.8
1795 Male, age 51, unknown 123.9
2502 Female, age 75, unknown 117.4
Periaquaductal grey, dorsal
nTPM: 92.2
2464 Female, age 72, unknown 94.1
2850 Male, age 76, both hemispheres 93.0
1840 Male, age 53, unknown 92.9
1831 Male, age 72, unknown 88.8
Periaquaductal grey, lateral
nTPM: 103.8
2272 Male, age 74, both hemispheres 108.4
2140 Male, age 76, both hemispheres 102.9
2053 Male, age 18, unknown 100.1
Pretectal area
nTPM: 119.9
2007 Male, age 72, unknown 157.3
1944 Female, age 72, unknown 148.1
1817 Female, age 42, unknown 135.4
1816 Male, age 51, unknown 128.3
1815 Male, age 53, unknown 120.2
2407 Male, age 75, both hemispheres 117.0
2825 Male, age 18, unknown 114.8
2224 Female, age 72, unknown 111.6
2316 Male, age 76, right hemisphere 107.8
2667 Female, age 75, unknown 95.2
2273 Male, age 74, both hemispheres 83.5
Red nucleus
nTPM: 134.1
2588 Male, age 74, left hemisphere 183.8
2725 Female, age 75, unknown 154.7
2584 Male, age 75, left hemisphere 153.1
2785 Male, age 18, unknown 143.5
2769 Male, age 72, unknown 135.1
2227 Male, age 72, unknown 134.8
1904 Male, age 53, unknown 127.1
1954 Female, age 42, unknown 126.7
2503 Female, age 72, unknown 124.8
1865 Male, age 51, unknown 121.2
1821 Female, age 72, unknown 115.3
2823 Male, age 76, right hemisphere 89.5
Substantia nigra
nTPM: 152.8
1916 Female, age 42, unknown 224.1
1941 Male, age 53, unknown 174.5
1851 Male, age 51, unknown 163.6
2665 Male, age 74, both hemispheres 158.5
2583 Male, age 75, right hemisphere 152.3
1889 Female, age 72, unknown 145.5
2699 Male, age 18, unknown 144.2
2590 Female, age 75, unknown 126.6
2241 Male, age 72, unknown 126.3
2409 Female, age 72, unknown 112.8
Superior colliculus
nTPM: 119.8
2668 Female, age 75, unknown 161.9
2664 Male, age 75, both hemispheres 133.1
2587 Male, age 74, left hemisphere 127.6
1796 Male, age 53, unknown 125.3
1839 Male, age 51, unknown 124.4
2261 Male, age 18, unknown 121.6
1895 Male, age 76, right hemisphere 108.1
1913 Female, age 42, unknown 107.9
2087 Female, age 72, unknown 97.7
1995 Male, age 72, unknown 90.7
Ventral tegmental area
nTPM: 138.7
1915 Female, age 42, unknown 161.5
2218 Male, age 76, both hemispheres 149.8
1942 Male, age 51, unknown 145.6
2410 Female, age 72, unknown 134.9
2223 Female, age 72, unknown 122.6
2021 Male, age 53, unknown 117.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 75.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 75.4
Samples: 139

Max nTPM: 138.8
Min nTPM: 36.4
Std nTPM: 18.6
Median nTPM: 76.9
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 138.8
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 131.7
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 119.2
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 112.5
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 111.9
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 111.7
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 111.4
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 107.6
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 106.4
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 102.5
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 99.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 182.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 182.5
FF:10158-103A5 76 years, female 182.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 61.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 61.2
Samples: 4

Max nTPM: 74.3
Min nTPM: 49.2
Sample A Female 74.3
Sample B Female 49.2
Sample C Male 70.9
Sample D Male 50.4
Midbrain
nTPM: 60.7
Samples: 4

Max nTPM: 71.0
Min nTPM: 50.3
Sample A Female 62.1
Sample B Female 50.3
Sample C Male 71.0
Sample D Male 59.2
Periaqueductal gray
nTPM: 51.3
Samples: 3

Max nTPM: 55.9
Min nTPM: 47.2
Sample B Female 50.7
Sample C Male 55.9
Sample D Male 47.2
Superior colliculi
nTPM: 58.4
Samples: 4

Max nTPM: 67.2
Min nTPM: 36.4
Sample A Female 67.2
Sample B Female 36.4
Sample C Male 63.8
Sample D Male 66.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 90.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 90.3
Samples: 4

Max nTPM: 91.2
Min nTPM: 88.5
Sample A Male 88.5
Sample B Male 90.6
Sample C Female 91.2
Sample D Female 90.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.7
71211746 Antisense, RP_050816_02_D01, Mouse strain C57BL/6J (56 days, male) 2.7

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