MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:44.8 nTPM
HPA Brain:72.3 nTPM
GTEx:44.8 nTPM
FANTOM5:112.6 Scaled Tags Per Million
Pig:126.7 nTPM
Mouse:212.7 nTPM
Allen mouse:12.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 72.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 61.9
2411 Female, age 72, unknown 69.5
1827 Male, age 72, unknown 69.2
2828 Female, age 72, unknown 66.2
2666 Male, age 74, left hemisphere 63.4
1870 Female, age 42, unknown 62.5
2586 Male, age 75, left hemisphere 62.5
2019 Male, age 18, unknown 61.2
2219 Male, age 76, both hemispheres 55.6
1833 Male, age 53, unknown 55.4
1830 Male, age 51, unknown 53.8
Dorsal raphe nucleus
nTPM: 70.9
2298 Female, age 72, unknown 80.7
2047 Male, age 72, unknown 78.8
2750 Male, age 76, both hemispheres 67.2
2016 Female, age 72, unknown 65.1
1828 Male, age 53, unknown 62.7
Inferior colliculus
nTPM: 56.2
1848 Female, age 42, unknown 60.9
2097 Female, age 72, unknown 58.9
1890 Male, age 53, unknown 57.0
2849 Male, age 72, unknown 48.0
Median raphe nucleus
nTPM: 62.9
2220 Male, age 76, midline 62.9
Periaquaductal grey, anterior
nTPM: 70.4
1947 Male, age 18, unknown 77.2
2502 Female, age 75, unknown 68.0
1795 Male, age 51, unknown 66.1
Periaquaductal grey, dorsal
nTPM: 57.4
1840 Male, age 53, unknown 67.4
2850 Male, age 76, both hemispheres 59.7
1831 Male, age 72, unknown 53.4
2464 Female, age 72, unknown 49.2
Periaquaductal grey, lateral
nTPM: 59.8
2053 Male, age 18, unknown 64.1
2272 Male, age 74, both hemispheres 62.5
2140 Male, age 76, both hemispheres 52.7
Pretectal area
nTPM: 62.7
1816 Male, age 51, unknown 71.0
2007 Male, age 72, unknown 71.0
1944 Female, age 72, unknown 69.6
2224 Female, age 72, unknown 65.9
1815 Male, age 53, unknown 64.5
2667 Female, age 75, unknown 64.5
1817 Female, age 42, unknown 64.1
2273 Male, age 74, both hemispheres 62.8
2407 Male, age 75, both hemispheres 57.4
2825 Male, age 18, unknown 52.8
2316 Male, age 76, right hemisphere 46.2
Red nucleus
nTPM: 59.3
1821 Female, age 72, unknown 67.5
1954 Female, age 42, unknown 66.4
2725 Female, age 75, unknown 65.2
1865 Male, age 51, unknown 64.4
1904 Male, age 53, unknown 63.9
2503 Female, age 72, unknown 61.4
2584 Male, age 75, left hemisphere 61.3
2785 Male, age 18, unknown 56.9
2769 Male, age 72, unknown 53.4
2227 Male, age 72, unknown 51.8
2823 Male, age 76, right hemisphere 49.8
2588 Male, age 74, left hemisphere 49.0
Substantia nigra
nTPM: 72.3
1916 Female, age 42, unknown 95.1
2241 Male, age 72, unknown 87.1
2409 Female, age 72, unknown 82.0
1851 Male, age 51, unknown 76.6
1889 Female, age 72, unknown 70.3
1941 Male, age 53, unknown 66.7
2699 Male, age 18, unknown 64.8
2665 Male, age 74, both hemispheres 63.9
2590 Female, age 75, unknown 58.9
2583 Male, age 75, right hemisphere 58.0
Superior colliculus
nTPM: 57.8
2261 Male, age 18, unknown 66.0
1796 Male, age 53, unknown 65.0
2587 Male, age 74, left hemisphere 64.2
2668 Female, age 75, unknown 62.9
2664 Male, age 75, both hemispheres 56.6
2087 Female, age 72, unknown 56.2
1913 Female, age 42, unknown 52.6
1839 Male, age 51, unknown 52.1
1995 Male, age 72, unknown 51.5
1895 Male, age 76, right hemisphere 51.1
Ventral tegmental area
nTPM: 72.0
2410 Female, age 72, unknown 83.6
1915 Female, age 42, unknown 79.7
1942 Male, age 51, unknown 72.1
2218 Male, age 76, both hemispheres 68.4
2223 Female, age 72, unknown 65.4
2021 Male, age 53, unknown 62.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 44.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 44.8
Samples: 139

Max nTPM: 71.5
Min nTPM: 30.7
Std nTPM: 7.5
Median nTPM: 43.0
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 71.5
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 69.8
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 63.9
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 61.6
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 60.9
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 60.6
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 59.4
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 58.7
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 58.4
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 58.2
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 56.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 112.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 112.6
FF:10158-103A5 76 years, female 112.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 126.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 122.7
Samples: 4

Max nTPM: 154.6
Min nTPM: 96.8
Sample A Female 154.6
Sample B Female 96.8
Sample C Male 136.9
Sample D Male 102.4
Midbrain
nTPM: 126.8
Samples: 4

Max nTPM: 171.1
Min nTPM: 97.4
Sample A Female 171.1
Sample B Female 102.6
Sample C Male 135.9
Sample D Male 97.4
Periaqueductal gray
nTPM: 102.1
Samples: 3

Max nTPM: 118.7
Min nTPM: 88.6
Sample B Female 99.0
Sample C Male 118.7
Sample D Male 88.6
Superior colliculi
nTPM: 120.4
Samples: 4

Max nTPM: 135.8
Min nTPM: 109.5
Sample A Female 124.1
Sample B Female 109.5
Sample C Male 135.8
Sample D Male 112.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 212.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 212.7
Samples: 4

Max nTPM: 227.4
Min nTPM: 197.8
Sample A Male 197.8
Sample B Male 213.4
Sample C Female 227.4
Sample D Female 212.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 12.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 12.3
70194910 Antisense, RP_050517_02_A05, Mouse strain C57BL/6J (56 days, male) 12.3

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