MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:6.6 nTPM
HPA Brain:31.0 nTPM
GTEx:6.6 nTPM
FANTOM5:9.4 Scaled Tags Per Million
Pig:21.8 nTPM
Mouse:36.7 nTPM
Allen mouse:13.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 31.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 17.4
1827 Male, age 72, unknown 27.6
2219 Male, age 76, both hemispheres 23.8
2828 Female, age 72, unknown 19.8
2411 Female, age 72, unknown 19.5
2666 Male, age 74, left hemisphere 18.5
1870 Female, age 42, unknown 14.6
2586 Male, age 75, left hemisphere 14.4
1833 Male, age 53, unknown 12.9
1830 Male, age 51, unknown 12.4
2019 Male, age 18, unknown 10.0
Dorsal raphe nucleus
nTPM: 21.3
2298 Female, age 72, unknown 27.5
2047 Male, age 72, unknown 26.3
2750 Male, age 76, both hemispheres 21.5
1828 Male, age 53, unknown 17.9
2016 Female, age 72, unknown 13.5
Inferior colliculus
nTPM: 14.5
2097 Female, age 72, unknown 18.2
1848 Female, age 42, unknown 14.7
2849 Male, age 72, unknown 13.1
1890 Male, age 53, unknown 12.0
Median raphe nucleus
nTPM: 30.5
2220 Male, age 76, midline 30.5
Periaquaductal grey, anterior
nTPM: 24.5
1795 Male, age 51, unknown 26.0
1947 Male, age 18, unknown 24.0
2502 Female, age 75, unknown 23.6
Periaquaductal grey, dorsal
nTPM: 18.1
1840 Male, age 53, unknown 21.3
2850 Male, age 76, both hemispheres 20.8
1831 Male, age 72, unknown 15.4
2464 Female, age 72, unknown 14.9
Periaquaductal grey, lateral
nTPM: 16.8
2053 Male, age 18, unknown 18.3
2272 Male, age 74, both hemispheres 16.5
2140 Male, age 76, both hemispheres 15.5
Pretectal area
nTPM: 19.5
1816 Male, age 51, unknown 29.5
2224 Female, age 72, unknown 24.8
1944 Female, age 72, unknown 22.2
2007 Male, age 72, unknown 20.0
2825 Male, age 18, unknown 19.4
1815 Male, age 53, unknown 18.6
2667 Female, age 75, unknown 17.9
2407 Male, age 75, both hemispheres 17.5
1817 Female, age 42, unknown 16.5
2316 Male, age 76, right hemisphere 14.7
2273 Male, age 74, both hemispheres 13.8
Red nucleus
nTPM: 9.7
2584 Male, age 75, left hemisphere 18.4
2725 Female, age 75, unknown 14.8
1954 Female, age 42, unknown 9.5
1821 Female, age 72, unknown 9.0
2503 Female, age 72, unknown 9.0
2785 Male, age 18, unknown 9.0
2588 Male, age 74, left hemisphere 8.9
1904 Male, age 53, unknown 8.4
2227 Male, age 72, unknown 7.9
2769 Male, age 72, unknown 7.7
1865 Male, age 51, unknown 6.9
2823 Male, age 76, right hemisphere 6.8
Substantia nigra
nTPM: 31.0
1916 Female, age 42, unknown 52.7
2241 Male, age 72, unknown 44.6
1851 Male, age 51, unknown 37.0
1941 Male, age 53, unknown 36.8
2409 Female, age 72, unknown 30.9
2665 Male, age 74, both hemispheres 26.4
2699 Male, age 18, unknown 26.2
1889 Female, age 72, unknown 22.2
2590 Female, age 75, unknown 17.8
2583 Male, age 75, right hemisphere 15.5
Superior colliculus
nTPM: 16.6
2261 Male, age 18, unknown 26.8
1796 Male, age 53, unknown 25.6
2087 Female, age 72, unknown 20.6
2668 Female, age 75, unknown 18.2
2664 Male, age 75, both hemispheres 17.3
1895 Male, age 76, right hemisphere 14.0
1839 Male, age 51, unknown 13.7
2587 Male, age 74, left hemisphere 11.9
1913 Female, age 42, unknown 10.5
1995 Male, age 72, unknown 7.9
Ventral tegmental area
nTPM: 29.4
1915 Female, age 42, unknown 34.3
2218 Male, age 76, both hemispheres 33.8
2410 Female, age 72, unknown 32.0
1942 Male, age 51, unknown 27.7
2223 Female, age 72, unknown 25.2
2021 Male, age 53, unknown 23.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 6.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 6.6
Samples: 139

Max nTPM: 30.8
Min nTPM: 0.4
Std nTPM: 6.1
Median nTPM: 5.0
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 30.8
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 30.4
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 29.0
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 22.9
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 21.7
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 21.2
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 19.0
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 18.6
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 18.1
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 17.9
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 16.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 9.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 9.4
FF:10158-103A5 76 years, female 9.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 21.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 20.0
Samples: 4

Max nTPM: 30.3
Min nTPM: 6.6
Sample A Female 27.3
Sample B Female 15.6
Sample C Male 30.3
Sample D Male 6.6
Midbrain
nTPM: 21.8
Samples: 4

Max nTPM: 29.9
Min nTPM: 7.4
Sample A Female 7.4
Sample B Female 21.2
Sample C Male 29.9
Sample D Male 28.6
Periaqueductal gray
nTPM: 21.4
Samples: 3

Max nTPM: 28.8
Min nTPM: 17.7
Sample B Female 17.7
Sample C Male 28.8
Sample D Male 17.8
Superior colliculi
nTPM: 18.0
Samples: 4

Max nTPM: 22.0
Min nTPM: 10.8
Sample A Female 20.2
Sample B Female 10.8
Sample C Male 22.0
Sample D Male 19.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 36.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 36.7
Samples: 4

Max nTPM: 40.8
Min nTPM: 30.6
Sample A Male 30.6
Sample B Male 40.0
Sample C Female 40.8
Sample D Female 35.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 13.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 13.6
70615597 Antisense, RP_050725_01_D05, Mouse strain C57BL/6J (56 days, male) 14.1
545100 Antisense, RP_040825_02_D01, Mouse strain C57BL/6J (56 days, male) 13.1

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