MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:4.3 nTPM
HPA Brain:41.7 nTPM
GTEx:4.3 nTPM
FANTOM5:0.1 Scaled Tags Per Million
Pig:18.9 nTPM
Mouse:27.5 nTPM
Allen mouse:1.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 41.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 17.0
2411 Female, age 72, unknown 40.6
1870 Female, age 42, unknown 26.0
1827 Male, age 72, unknown 23.9
2586 Male, age 75, left hemisphere 17.1
2666 Male, age 74, left hemisphere 15.4
2828 Female, age 72, unknown 13.9
1830 Male, age 51, unknown 11.1
1833 Male, age 53, unknown 10.8
2219 Male, age 76, both hemispheres 10.2
2019 Male, age 18, unknown 1.4
Dorsal raphe nucleus
nTPM: 35.2
2298 Female, age 72, unknown 45.4
1828 Male, age 53, unknown 36.5
2047 Male, age 72, unknown 34.9
2750 Male, age 76, both hemispheres 31.4
2016 Female, age 72, unknown 27.9
Inferior colliculus
nTPM: 18.1
2849 Male, age 72, unknown 29.7
1848 Female, age 42, unknown 19.5
2097 Female, age 72, unknown 13.5
1890 Male, age 53, unknown 9.9
Median raphe nucleus
nTPM: 41.7
2220 Male, age 76, midline 41.7
Periaquaductal grey, anterior
nTPM: 41.1
2502 Female, age 75, unknown 74.5
1795 Male, age 51, unknown 34.3
1947 Male, age 18, unknown 14.6
Periaquaductal grey, dorsal
nTPM: 38.4
1840 Male, age 53, unknown 57.0
1831 Male, age 72, unknown 40.9
2850 Male, age 76, both hemispheres 28.5
2464 Female, age 72, unknown 27.2
Periaquaductal grey, lateral
nTPM: 40.4
2053 Male, age 18, unknown 70.9
2140 Male, age 76, both hemispheres 35.6
2272 Male, age 74, both hemispheres 14.7
Pretectal area
nTPM: 26.8
2825 Male, age 18, unknown 71.5
2667 Female, age 75, unknown 46.0
2224 Female, age 72, unknown 42.3
1816 Male, age 51, unknown 33.4
1944 Female, age 72, unknown 24.6
2316 Male, age 76, right hemisphere 22.0
2273 Male, age 74, both hemispheres 16.3
2407 Male, age 75, both hemispheres 12.3
1815 Male, age 53, unknown 11.8
2007 Male, age 72, unknown 7.9
1817 Female, age 42, unknown 6.8
Red nucleus
nTPM: 5.2
2584 Male, age 75, left hemisphere 12.2
2588 Male, age 74, left hemisphere 6.4
2769 Male, age 72, unknown 6.4
2227 Male, age 72, unknown 6.0
1954 Female, age 42, unknown 5.9
1821 Female, age 72, unknown 4.5
2503 Female, age 72, unknown 4.4
2725 Female, age 75, unknown 4.4
1904 Male, age 53, unknown 4.3
2823 Male, age 76, right hemisphere 3.6
1865 Male, age 51, unknown 2.3
2785 Male, age 18, unknown 2.1
Substantia nigra
nTPM: 3.7
1889 Female, age 72, unknown 9.0
2665 Male, age 74, both hemispheres 8.3
2590 Female, age 75, unknown 3.7
2699 Male, age 18, unknown 3.6
2241 Male, age 72, unknown 2.9
1851 Male, age 51, unknown 2.4
1941 Male, age 53, unknown 2.2
2409 Female, age 72, unknown 1.9
2583 Male, age 75, right hemisphere 1.9
1916 Female, age 42, unknown 1.5
Superior colliculus
nTPM: 24.3
2261 Male, age 18, unknown 68.2
2664 Male, age 75, both hemispheres 28.4
2587 Male, age 74, left hemisphere 27.8
1839 Male, age 51, unknown 27.5
1796 Male, age 53, unknown 23.4
2087 Female, age 72, unknown 19.7
1895 Male, age 76, right hemisphere 18.0
1913 Female, age 42, unknown 17.2
1995 Male, age 72, unknown 10.0
2668 Female, age 75, unknown 3.3
Ventral tegmental area
nTPM: 12.3
2021 Male, age 53, unknown 28.7
1942 Male, age 51, unknown 12.7
2218 Male, age 76, both hemispheres 11.1
2223 Female, age 72, unknown 9.0
1915 Female, age 42, unknown 8.9
2410 Female, age 72, unknown 3.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 4.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 4.3
Samples: 139

Max nTPM: 29.0
Min nTPM: 0.4
Std nTPM: 3.9
Median nTPM: 3.3
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 29.0
GTEX-P44G-0011-R2A-SM-2XCD2 30-39 years, male 18.6
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 15.1
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 15.0
GTEX-147GR-0011-R2b-SM-5S2RQ 60-69 years, male 14.3
GTEX-1IKJJ-0011-R2b-SM-ARZLJ 60-69 years, male 13.0
GTEX-17EVP-0011-R2a-SM-7LG4W 40-49 years, male 12.4
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 12.4
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 12.0
GTEX-16Z82-0011-R2b-SM-79OK9 60-69 years, male 11.9
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 10.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 0.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 0.1
FF:10158-103A5 76 years, female 0.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 18.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 9.0
Samples: 4

Max nTPM: 13.7
Min nTPM: 2.0
Sample A Female 13.7
Sample B Female 8.8
Sample C Male 11.3
Sample D Male 2.0
Midbrain
nTPM: 16.2
Samples: 4

Max nTPM: 24.0
Min nTPM: 1.7
Sample A Female 1.7
Sample B Female 21.2
Sample C Male 17.7
Sample D Male 24.0
Periaqueductal gray
nTPM: 18.9
Samples: 3

Max nTPM: 26.1
Min nTPM: 12.5
Sample B Female 18.0
Sample C Male 26.1
Sample D Male 12.5
Superior colliculi
nTPM: 9.7
Samples: 4

Max nTPM: 14.6
Min nTPM: 6.7
Sample A Female 14.6
Sample B Female 7.4
Sample C Male 10.0
Sample D Male 6.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 27.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 27.5
Samples: 4

Max nTPM: 32.4
Min nTPM: 21.1
Sample A Male 26.5
Sample B Male 29.9
Sample C Female 21.1
Sample D Female 32.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.2
79670444 Antisense, RP_071204_01_D11, Mouse strain C57BL/6J (56 days, male) 1.2
79556712 Antisense, RP_071204_01_D11, Mouse strain C57BL/6J (56 days, male) 1.0

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