MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:31.7 nTPM
HPA Brain:109.7 nTPM
GTEx:31.7 nTPM
FANTOM5:262.2 Scaled Tags Per Million
Pig:69.7 nTPM
Mouse:13.4 nTPM
Allen mouse:7.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 109.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 95.0
1830 Male, age 51, unknown 113.2
1833 Male, age 53, unknown 112.6
1870 Female, age 42, unknown 105.5
2411 Female, age 72, unknown 102.0
2219 Male, age 76, both hemispheres 94.5
2019 Male, age 18, unknown 92.1
2828 Female, age 72, unknown 89.2
2666 Male, age 74, left hemisphere 81.6
1827 Male, age 72, unknown 79.8
2586 Male, age 75, left hemisphere 79.1
Dorsal raphe nucleus
nTPM: 72.1
2750 Male, age 76, both hemispheres 108.4
2016 Female, age 72, unknown 86.1
1828 Male, age 53, unknown 68.5
2047 Male, age 72, unknown 49.9
2298 Female, age 72, unknown 47.5
Inferior colliculus
nTPM: 80.0
2849 Male, age 72, unknown 87.3
1848 Female, age 42, unknown 84.3
1890 Male, age 53, unknown 75.4
2097 Female, age 72, unknown 73.2
Median raphe nucleus
nTPM: 52.4
2220 Male, age 76, midline 52.4
Periaquaductal grey, anterior
nTPM: 82.8
2502 Female, age 75, unknown 106.9
1947 Male, age 18, unknown 82.5
1795 Male, age 51, unknown 58.9
Periaquaductal grey, dorsal
nTPM: 70.2
2464 Female, age 72, unknown 91.4
1840 Male, age 53, unknown 66.9
1831 Male, age 72, unknown 62.9
2850 Male, age 76, both hemispheres 59.5
Periaquaductal grey, lateral
nTPM: 64.4
2053 Male, age 18, unknown 72.0
2140 Male, age 76, both hemispheres 62.0
2272 Male, age 74, both hemispheres 59.0
Pretectal area
nTPM: 76.5
2316 Male, age 76, right hemisphere 115.3
1815 Male, age 53, unknown 99.2
2407 Male, age 75, both hemispheres 94.0
1817 Female, age 42, unknown 77.4
2825 Male, age 18, unknown 75.5
2007 Male, age 72, unknown 73.2
2667 Female, age 75, unknown 65.2
2273 Male, age 74, both hemispheres 61.6
2224 Female, age 72, unknown 61.3
1816 Male, age 51, unknown 59.9
1944 Female, age 72, unknown 59.3
Red nucleus
nTPM: 109.7
1865 Male, age 51, unknown 133.9
1904 Male, age 53, unknown 128.1
2823 Male, age 76, right hemisphere 118.1
1821 Female, age 72, unknown 116.8
2503 Female, age 72, unknown 116.7
2785 Male, age 18, unknown 113.0
1954 Female, age 42, unknown 112.0
2769 Male, age 72, unknown 110.7
2227 Male, age 72, unknown 109.9
2588 Male, age 74, left hemisphere 90.3
2725 Female, age 75, unknown 85.2
2584 Male, age 75, left hemisphere 81.3
Substantia nigra
nTPM: 75.5
2409 Female, age 72, unknown 109.9
2583 Male, age 75, right hemisphere 87.0
2699 Male, age 18, unknown 81.5
1851 Male, age 51, unknown 81.1
1889 Female, age 72, unknown 81.0
2241 Male, age 72, unknown 78.6
2590 Female, age 75, unknown 74.1
1916 Female, age 42, unknown 55.7
1941 Male, age 53, unknown 54.2
2665 Male, age 74, both hemispheres 52.0
Superior colliculus
nTPM: 97.9
1995 Male, age 72, unknown 141.8
1913 Female, age 42, unknown 137.5
1895 Male, age 76, right hemisphere 129.1
2668 Female, age 75, unknown 102.7
1839 Male, age 51, unknown 99.3
2587 Male, age 74, left hemisphere 84.8
1796 Male, age 53, unknown 77.5
2261 Male, age 18, unknown 71.8
2664 Male, age 75, both hemispheres 71.2
2087 Female, age 72, unknown 63.5
Ventral tegmental area
nTPM: 72.2
2410 Female, age 72, unknown 97.2
1942 Male, age 51, unknown 70.5
2021 Male, age 53, unknown 68.9
1915 Female, age 42, unknown 67.6
2223 Female, age 72, unknown 67.1
2218 Male, age 76, both hemispheres 62.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 31.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 31.7
Samples: 139

Max nTPM: 98.7
Min nTPM: 10.6
Std nTPM: 15.0
Median nTPM: 26.9
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 98.7
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 78.2
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 76.6
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 65.9
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 65.1
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 64.1
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 63.4
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 63.0
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 61.8
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 60.0
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 58.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 262.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 262.2
FF:10158-103A5 76 years, female 262.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 69.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 66.1
Samples: 4

Max nTPM: 100.2
Min nTPM: 44.0
Sample A Female 62.7
Sample B Female 44.0
Sample C Male 57.4
Sample D Male 100.2
Midbrain
nTPM: 69.7
Samples: 4

Max nTPM: 125.3
Min nTPM: 49.1
Sample A Female 125.3
Sample B Female 53.0
Sample C Male 51.3
Sample D Male 49.1
Periaqueductal gray
nTPM: 47.9
Samples: 3

Max nTPM: 51.1
Min nTPM: 42.9
Sample B Female 51.1
Sample C Male 42.9
Sample D Male 49.8
Superior colliculi
nTPM: 52.7
Samples: 4

Max nTPM: 70.4
Min nTPM: 28.3
Sample A Female 54.4
Sample B Female 28.3
Sample C Male 57.7
Sample D Male 70.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 13.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 13.4
Samples: 4

Max nTPM: 14.7
Min nTPM: 11.7
Sample A Male 11.7
Sample B Male 14.5
Sample C Female 14.7
Sample D Female 12.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 7.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 7.1
74821568 Antisense, RP_060321_02_A02, Mouse strain C57BL/6J (56 days, male) 7.1

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