MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:2.2 nTPM
HPA Brain:9.0 nTPM
GTEx:2.2 nTPM
FANTOM5:4.0 Scaled Tags Per Million
Pig:6.6 nTPM
Mouse:2.7 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 9.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 6.2
2586 Male, age 75, left hemisphere 11.6
2219 Male, age 76, both hemispheres 7.5
1830 Male, age 51, unknown 6.9
1827 Male, age 72, unknown 5.5
1870 Female, age 42, unknown 5.5
2411 Female, age 72, unknown 5.4
1833 Male, age 53, unknown 5.3
2666 Male, age 74, left hemisphere 5.1
2828 Female, age 72, unknown 5.1
2019 Male, age 18, unknown 4.2
Dorsal raphe nucleus
nTPM: 5.8
2047 Male, age 72, unknown 6.6
1828 Male, age 53, unknown 6.3
2016 Female, age 72, unknown 6.3
2750 Male, age 76, both hemispheres 5.2
2298 Female, age 72, unknown 4.7
Inferior colliculus
nTPM: 6.5
2849 Male, age 72, unknown 8.2
1848 Female, age 42, unknown 7.2
1890 Male, age 53, unknown 6.5
2097 Female, age 72, unknown 4.3
Median raphe nucleus
nTPM: 5.2
2220 Male, age 76, midline 5.2
Periaquaductal grey, anterior
nTPM: 9.0
1947 Male, age 18, unknown 13.2
2502 Female, age 75, unknown 7.8
1795 Male, age 51, unknown 6.0
Periaquaductal grey, dorsal
nTPM: 7.9
1840 Male, age 53, unknown 8.8
2850 Male, age 76, both hemispheres 8.8
1831 Male, age 72, unknown 8.3
2464 Female, age 72, unknown 5.7
Periaquaductal grey, lateral
nTPM: 7.6
2140 Male, age 76, both hemispheres 9.3
2053 Male, age 18, unknown 8.8
2272 Male, age 74, both hemispheres 4.8
Pretectal area
nTPM: 6.2
2407 Male, age 75, both hemispheres 8.8
2825 Male, age 18, unknown 8.4
1816 Male, age 51, unknown 6.9
2224 Female, age 72, unknown 6.7
2316 Male, age 76, right hemisphere 6.5
1817 Female, age 42, unknown 6.0
2273 Male, age 74, both hemispheres 5.8
1815 Male, age 53, unknown 4.9
2667 Female, age 75, unknown 4.8
1944 Female, age 72, unknown 4.6
2007 Male, age 72, unknown 4.5
Red nucleus
nTPM: 6.0
2584 Male, age 75, left hemisphere 10.8
2503 Female, age 72, unknown 7.5
2725 Female, age 75, unknown 6.8
2823 Male, age 76, right hemisphere 6.4
1865 Male, age 51, unknown 5.9
2588 Male, age 74, left hemisphere 5.6
1821 Female, age 72, unknown 5.4
2227 Male, age 72, unknown 5.4
1904 Male, age 53, unknown 5.0
2769 Male, age 72, unknown 4.9
1954 Female, age 42, unknown 4.8
2785 Male, age 18, unknown 3.8
Substantia nigra
nTPM: 4.3
2583 Male, age 75, right hemisphere 6.8
2241 Male, age 72, unknown 5.2
1889 Female, age 72, unknown 4.8
2590 Female, age 75, unknown 4.8
2665 Male, age 74, both hemispheres 4.8
1851 Male, age 51, unknown 3.7
1941 Male, age 53, unknown 3.6
2409 Female, age 72, unknown 3.5
2699 Male, age 18, unknown 3.5
1916 Female, age 42, unknown 2.8
Superior colliculus
nTPM: 6.5
1839 Male, age 51, unknown 7.7
2664 Male, age 75, both hemispheres 7.7
1895 Male, age 76, right hemisphere 6.9
2668 Female, age 75, unknown 6.8
1995 Male, age 72, unknown 6.3
2261 Male, age 18, unknown 6.3
2087 Female, age 72, unknown 6.2
1796 Male, age 53, unknown 6.1
2587 Male, age 74, left hemisphere 5.6
1913 Female, age 42, unknown 5.1
Ventral tegmental area
nTPM: 7.0
2021 Male, age 53, unknown 10.2
2223 Female, age 72, unknown 9.2
1942 Male, age 51, unknown 7.0
1915 Female, age 42, unknown 5.4
2410 Female, age 72, unknown 5.2
2218 Male, age 76, both hemispheres 5.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 2.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 2.2
Samples: 139

Max nTPM: 12.2
Min nTPM: 0.7
Std nTPM: 1.8
Median nTPM: 1.7
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 12.2
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 11.8
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 11.0
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 7.8
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 6.9
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 5.9
GTEX-15RJE-0011-R2b-SM-79OMP 40-49 years, male 5.6
GTEX-P44G-0011-R2A-SM-2XCD2 30-39 years, male 4.9
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 4.7
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 4.6
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 4.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 4.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 4.0
FF:10158-103A5 76 years, female 4.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 6.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 2.6
Samples: 4

Max nTPM: 3.3
Min nTPM: 2.0
Sample A Female 2.8
Sample B Female 3.3
Sample C Male 2.0
Sample D Male 2.2
Midbrain
nTPM: 2.8
Samples: 4

Max nTPM: 3.9
Min nTPM: 1.9
Sample A Female 2.5
Sample B Female 1.9
Sample C Male 3.9
Sample D Male 2.8
Periaqueductal gray
nTPM: 2.4
Samples: 3

Max nTPM: 2.5
Min nTPM: 2.3
Sample B Female 2.3
Sample C Male 2.5
Sample D Male 2.3
Superior colliculi
nTPM: 6.6
Samples: 4

Max nTPM: 14.6
Min nTPM: 3.2
Sample A Female 5.1
Sample B Female 14.6
Sample C Male 3.2
Sample D Male 3.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 2.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 2.7
Samples: 4

Max nTPM: 2.9
Min nTPM: 2.5
Sample A Male 2.6
Sample B Male 2.9
Sample C Female 2.5
Sample D Female 2.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
69626612 Antisense, RP_050428_01_A04, Mouse strain C57BL/6J (56 days, male) 0.0

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