MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:103.5 nTPM
HPA Brain:64.7 nTPM
GTEx:103.5 nTPM
FANTOM5:171.6 Scaled Tags Per Million
Pig:173.2 nTPM
Mouse:139.9 nTPM
Allen mouse:3.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 64.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 51.2
2411 Female, age 72, unknown 64.7
2019 Male, age 18, unknown 64.1
1870 Female, age 42, unknown 58.0
1827 Male, age 72, unknown 51.4
2666 Male, age 74, left hemisphere 49.1
2828 Female, age 72, unknown 48.2
1833 Male, age 53, unknown 47.9
2219 Male, age 76, both hemispheres 42.9
2586 Male, age 75, left hemisphere 42.8
1830 Male, age 51, unknown 42.5
Dorsal raphe nucleus
nTPM: 64.7
2298 Female, age 72, unknown 82.7
1828 Male, age 53, unknown 63.8
2047 Male, age 72, unknown 62.0
2016 Female, age 72, unknown 58.8
2750 Male, age 76, both hemispheres 56.1
Inferior colliculus
nTPM: 56.2
2097 Female, age 72, unknown 71.4
1890 Male, age 53, unknown 58.7
1848 Female, age 42, unknown 54.4
2849 Male, age 72, unknown 40.3
Median raphe nucleus
nTPM: 51.9
2220 Male, age 76, midline 51.9
Periaquaductal grey, anterior
nTPM: 54.1
1947 Male, age 18, unknown 58.0
2502 Female, age 75, unknown 54.0
1795 Male, age 51, unknown 50.3
Periaquaductal grey, dorsal
nTPM: 51.1
1840 Male, age 53, unknown 54.1
2464 Female, age 72, unknown 52.4
1831 Male, age 72, unknown 49.2
2850 Male, age 76, both hemispheres 48.8
Periaquaductal grey, lateral
nTPM: 47.7
2272 Male, age 74, both hemispheres 54.0
2053 Male, age 18, unknown 46.1
2140 Male, age 76, both hemispheres 43.0
Pretectal area
nTPM: 57.6
1817 Female, age 42, unknown 67.3
2224 Female, age 72, unknown 65.2
1816 Male, age 51, unknown 64.0
2273 Male, age 74, both hemispheres 63.4
2667 Female, age 75, unknown 63.0
2007 Male, age 72, unknown 62.7
1944 Female, age 72, unknown 61.4
1815 Male, age 53, unknown 54.0
2316 Male, age 76, right hemisphere 51.3
2825 Male, age 18, unknown 45.2
2407 Male, age 75, both hemispheres 35.9
Red nucleus
nTPM: 54.7
1821 Female, age 72, unknown 78.8
1954 Female, age 42, unknown 60.5
2725 Female, age 75, unknown 57.5
2227 Male, age 72, unknown 57.4
1904 Male, age 53, unknown 57.3
2769 Male, age 72, unknown 56.2
2503 Female, age 72, unknown 55.9
2785 Male, age 18, unknown 53.5
1865 Male, age 51, unknown 53.2
2823 Male, age 76, right hemisphere 53.2
2588 Male, age 74, left hemisphere 41.8
2584 Male, age 75, left hemisphere 31.5
Substantia nigra
nTPM: 62.2
2241 Male, age 72, unknown 84.1
1916 Female, age 42, unknown 79.1
1851 Male, age 51, unknown 74.8
1889 Female, age 72, unknown 67.9
1941 Male, age 53, unknown 63.5
2409 Female, age 72, unknown 63.0
2699 Male, age 18, unknown 55.0
2590 Female, age 75, unknown 47.8
2665 Male, age 74, both hemispheres 45.3
2583 Male, age 75, right hemisphere 41.5
Superior colliculus
nTPM: 50.9
2587 Male, age 74, left hemisphere 59.8
1895 Male, age 76, right hemisphere 57.2
2087 Female, age 72, unknown 56.4
2668 Female, age 75, unknown 53.9
2261 Male, age 18, unknown 52.9
1839 Male, age 51, unknown 50.6
1796 Male, age 53, unknown 49.6
1913 Female, age 42, unknown 45.6
1995 Male, age 72, unknown 42.4
2664 Male, age 75, both hemispheres 40.6
Ventral tegmental area
nTPM: 59.4
2410 Female, age 72, unknown 73.0
1915 Female, age 42, unknown 67.1
2218 Male, age 76, both hemispheres 61.0
1942 Male, age 51, unknown 54.1
2021 Male, age 53, unknown 52.8
2223 Female, age 72, unknown 48.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 103.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 103.5
Samples: 139

Max nTPM: 167.9
Min nTPM: 55.6
Std nTPM: 19.6
Median nTPM: 101.0
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 167.9
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 158.3
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 151.8
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 150.4
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 148.4
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 147.5
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 144.3
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 138.8
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 132.6
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 132.4
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 132.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 171.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 171.6
FF:10158-103A5 76 years, female 171.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 173.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 141.5
Samples: 4

Max nTPM: 205.6
Min nTPM: 95.5
Sample A Female 205.6
Sample B Female 141.5
Sample C Male 123.2
Sample D Male 95.5
Midbrain
nTPM: 155.0
Samples: 4

Max nTPM: 167.4
Min nTPM: 136.5
Sample A Female 167.4
Sample B Female 156.1
Sample C Male 159.8
Sample D Male 136.5
Periaqueductal gray
nTPM: 129.5
Samples: 3

Max nTPM: 150.5
Min nTPM: 112.0
Sample B Female 150.5
Sample C Male 125.9
Sample D Male 112.0
Superior colliculi
nTPM: 173.2
Samples: 4

Max nTPM: 219.9
Min nTPM: 127.3
Sample A Female 219.9
Sample B Female 173.3
Sample C Male 172.3
Sample D Male 127.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 139.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 139.9
Samples: 4

Max nTPM: 142.8
Min nTPM: 137.2
Sample A Male 137.8
Sample B Male 137.2
Sample C Female 141.8
Sample D Female 142.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.5
70743842 Antisense, RP_050725_01_G04, Mouse strain C57BL/6J (56 days, male) 6.1
633302 Antisense, RP_040907_02_F10, Mouse strain C57BL/6J (56 days, male) 0.9

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