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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
54.2
nTPM
Monaco:
43.7
nTPM
Schmiedel:
63.4
TPM
T-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max nTPM
54.2
HPA sample
nTPM
gdT-cell nTPM: 48.0
Samples: 6
Max nTPM: 79.3
Min nTPM: 26.9
P10809_1007
26.9
P10809_1022
56.3
P10809_1041
79.3
P10809_1060
42.6
P10809_1077
31.4
P10809_1098
51.6
MAIT T-cell nTPM: 47.9
Samples: 6
Max nTPM: 61.6
Min nTPM: 26.0
P10809_1006
26.0
P10809_1024
61.6
P10809_1043
52.5
P10809_1062
45.8
P10809_1083
43.5
P10809_1097
58.1
Memory CD4 T-cell nTPM: 45.5
Samples: 6
Max nTPM: 57.4
Min nTPM: 26.1
P10809_1014
26.1
P10809_1026
54.0
P10809_1045
57.4
P10809_1064
39.0
P10809_1086
44.2
P10809_1113
52.5
Memory CD8 T-cell nTPM: 54.2
Samples: 5
Max nTPM: 64.8
Min nTPM: 36.6
P10809_1012
36.6
P10809_1027
64.8
P10809_1046
63.0
P10809_1065
50.3
P10809_1111
56.3
Naive CD4 T-cell nTPM: 53.5
Samples: 6
Max nTPM: 78.9
Min nTPM: 20.4
P10809_1015
20.4
P10809_1030
52.2
P10809_1049
78.9
P10809_1068
57.6
P10809_1085
57.6
P10809_1112
54.0
Naive CD8 T-cell nTPM: 46.2
Samples: 6
Max nTPM: 56.6
Min nTPM: 23.0
P10809_1016
23.0
P10809_1031
54.5
P10809_1050
46.7
P10809_1069
52.1
P10809_1087
44.1
P10809_1110
56.6
T-reg nTPM: 47.9
Samples: 6
Max nTPM: 76.0
Min nTPM: 22.9
P10809_1018
24.8
P10809_1037
44.0
P10809_1056
76.0
P10809_1075
22.9
P10809_1094
49.8
P10809_1106
69.9
T-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max nTPM
43.7
Monaco sample
nTPM
Central memory CD8 T-cell nTPM: 29.0
Samples: 4
Max nTPM: 32.4
Min nTPM: 25.0
RHH5202_R3573
30.8
RHH5230_R3602
27.6
RHH5259_R3631
25.0
RHH5288_R3660
32.4
Effector memory CD8 T-cell nTPM: 43.7
Samples: 4
Max nTPM: 54.5
Min nTPM: 22.9
RHH5203_R3574
54.5
RHH5231_R3603
22.9
RHH5260_R3632
51.3
RHH5289_R3661
46.2
MAIT T-cell nTPM: 30.3
Samples: 4
Max nTPM: 41.0
Min nTPM: 21.9
RHH5233_R3605
29.7
RHH5205_R3576
41.0
RHH5262_R3634
21.9
RHH5297_R3663
28.5
Memory CD4 T-cell TFH nTPM: 30.0
Samples: 4
Max nTPM: 50.7
Min nTPM: 3.3
RHH5300_R3666
24.6
RHH5236_R3608
50.7
RHH5265_R3637
41.5
RHH5208_R3579
3.3
Memory CD4 T-cell Th1 nTPM: 28.8
Samples: 4
Max nTPM: 36.3
Min nTPM: 19.6
RHH5210_R3581
19.6
RHH5302_R3668
29.0
RHH5238_R3610
30.3
RHH5267_R3639
36.3
Memory CD4 T-cell Th1/Th17 nTPM: 23.1
Samples: 4
Max nTPM: 25.7
Min nTPM: 18.3
RHH5303_R3669
24.6
RHH5211_R3582
25.7
RHH5239_R3611
23.8
RHH5268_R3640
18.3
Memory CD4 T-cell Th17 nTPM: 32.9
Samples: 4
Max nTPM: 35.8
Min nTPM: 30.5
RHH5304_R3670
35.8
RHH5212_R3583
33.7
RHH5240_R3612
30.5
RHH5269_R3641
31.5
Memory CD4 T-cell Th2 nTPM: 32.9
Samples: 4
Max nTPM: 45.1
Min nTPM: 23.4
RHH5305_R3671
23.4
RHH5213_R3584
45.1
RHH5241_R3613
26.8
RHH5270_R3642
36.1
Naive CD4 T-cell nTPM: 22.1
Samples: 4
Max nTPM: 30.7
Min nTPM: 17.4
RHH5306_R3672
30.7
RHH5214_R3585
17.4
RHH5242_R3614
20.5
RHH5271_R3643
19.8
Naive CD8 T-cell nTPM: 30.7
Samples: 4
Max nTPM: 47.0
Min nTPM: 20.8
RHH5201_R3572
47.0
RHH5229_R3601
20.8
RHH5258_R3630
27.7
RHH5287_R3659
27.3
Non-Vd2 gdTCR nTPM: 26.5
Samples: 4
Max nTPM: 33.4
Min nTPM: 20.6
RHH5235_R3607
33.4
RHH5264_R3636
28.1
RHH5207_R3578
20.6
RHH5299_R3665
23.7
T-reg nTPM: 32.1
Samples: 4
Max nTPM: 46.7
Min nTPM: 21.9
RHH5301_R3667
21.9
RHH5237_R3609
46.7
RHH5266_R3638
29.8
RHH5209_R3580
29.8
Terminal effector memory CD4 T-cell nTPM: 28.1
Samples: 2
Max nTPM: 36.2
Min nTPM: 19.9
RHH5243_R3615
36.2
RHH5272_R3644
19.9
Terminal effector memory CD8 T-cell nTPM: 31.9
Samples: 4
Max nTPM: 41.6
Min nTPM: 16.4
RHH5232_R3604
16.4
RHH5204_R3575
29.6
RHH5261_R3633
41.6
RHH5296_R3662
40.1
Vd2 gdTCR nTPM: 26.7
Samples: 4
Max nTPM: 28.9
Min nTPM: 24.3
RHH5234_R3606
28.9
RHH5206_R3577
26.6
RHH5263_R3635
24.3
RHH5298_R3664
26.9
T-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
The Human Protein Atlas project is funded
