MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:17.5 nTPM
HPA Brain:41.8 nTPM
GTEx:17.5 nTPM
FANTOM5:16.0 Scaled Tags Per Million
Pig:7.5 nTPM
Mouse:43.9 nTPM
Allen mouse:6.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 41.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 30.0
2586 Male, age 75, left hemisphere 54.5
2019 Male, age 18, unknown 50.6
1827 Male, age 72, unknown 34.2
2828 Female, age 72, unknown 33.3
1870 Female, age 42, unknown 24.8
2666 Male, age 74, left hemisphere 24.0
2411 Female, age 72, unknown 22.7
1830 Male, age 51, unknown 19.6
1833 Male, age 53, unknown 18.4
2219 Male, age 76, both hemispheres 18.1
Dorsal raphe nucleus
nTPM: 22.3
2750 Male, age 76, both hemispheres 24.5
2298 Female, age 72, unknown 23.4
1828 Male, age 53, unknown 21.9
2047 Male, age 72, unknown 21.2
2016 Female, age 72, unknown 20.4
Inferior colliculus
nTPM: 22.2
2097 Female, age 72, unknown 28.6
1890 Male, age 53, unknown 23.5
1848 Female, age 42, unknown 18.4
2849 Male, age 72, unknown 18.3
Median raphe nucleus
nTPM: 20.2
2220 Male, age 76, midline 20.2
Periaquaductal grey, anterior
nTPM: 26.1
1795 Male, age 51, unknown 38.1
2502 Female, age 75, unknown 27.1
1947 Male, age 18, unknown 13.1
Periaquaductal grey, dorsal
nTPM: 24.8
1831 Male, age 72, unknown 32.6
2464 Female, age 72, unknown 23.5
1840 Male, age 53, unknown 22.8
2850 Male, age 76, both hemispheres 20.3
Periaquaductal grey, lateral
nTPM: 23.8
2053 Male, age 18, unknown 26.8
2272 Male, age 74, both hemispheres 22.5
2140 Male, age 76, both hemispheres 22.3
Pretectal area
nTPM: 41.8
1816 Male, age 51, unknown 68.8
2007 Male, age 72, unknown 63.9
1817 Female, age 42, unknown 56.0
1944 Female, age 72, unknown 55.6
1815 Male, age 53, unknown 51.7
2667 Female, age 75, unknown 33.2
2407 Male, age 75, both hemispheres 31.5
2273 Male, age 74, both hemispheres 29.2
2224 Female, age 72, unknown 25.9
2316 Male, age 76, right hemisphere 22.5
2825 Male, age 18, unknown 21.1
Red nucleus
nTPM: 26.6
2785 Male, age 18, unknown 48.3
2584 Male, age 75, left hemisphere 35.7
2588 Male, age 74, left hemisphere 33.6
2503 Female, age 72, unknown 28.6
2725 Female, age 75, unknown 24.6
1954 Female, age 42, unknown 22.8
2769 Male, age 72, unknown 21.9
2823 Male, age 76, right hemisphere 21.3
2227 Male, age 72, unknown 21.0
1821 Female, age 72, unknown 20.9
1865 Male, age 51, unknown 20.6
1904 Male, age 53, unknown 20.1
Substantia nigra
nTPM: 22.4
1889 Female, age 72, unknown 41.1
2583 Male, age 75, right hemisphere 33.8
1941 Male, age 53, unknown 26.2
2590 Female, age 75, unknown 23.7
2665 Male, age 74, both hemispheres 22.7
2409 Female, age 72, unknown 19.6
1851 Male, age 51, unknown 16.4
1916 Female, age 42, unknown 15.6
2241 Male, age 72, unknown 13.0
2699 Male, age 18, unknown 12.4
Superior colliculus
nTPM: 34.2
2087 Female, age 72, unknown 48.1
2261 Male, age 18, unknown 46.8
2664 Male, age 75, both hemispheres 39.4
1796 Male, age 53, unknown 36.1
1913 Female, age 42, unknown 35.1
1995 Male, age 72, unknown 34.2
2668 Female, age 75, unknown 31.4
2587 Male, age 74, left hemisphere 26.1
1839 Male, age 51, unknown 23.1
1895 Male, age 76, right hemisphere 21.9
Ventral tegmental area
nTPM: 20.3
2223 Female, age 72, unknown 23.1
1942 Male, age 51, unknown 22.5
2021 Male, age 53, unknown 21.4
2410 Female, age 72, unknown 19.4
2218 Male, age 76, both hemispheres 18.5
1915 Female, age 42, unknown 17.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 17.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 17.5
Samples: 139

Max nTPM: 33.7
Min nTPM: 8.3
Std nTPM: 4.9
Median nTPM: 16.5
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 33.7
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 31.7
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 30.6
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 30.3
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 29.2
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 28.7
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 27.9
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 27.3
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 26.8
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 25.4
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 24.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 16.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 16.0
FF:10158-103A5 76 years, female 16.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 7.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 5.9
Samples: 4

Max nTPM: 9.4
Min nTPM: 1.4
Sample A Female 9.4
Sample B Female 4.5
Sample C Male 8.3
Sample D Male 1.4
Midbrain
nTPM: 7.5
Samples: 4

Max nTPM: 12.6
Min nTPM: 1.9
Sample A Female 1.9
Sample B Female 5.5
Sample C Male 9.9
Sample D Male 12.6
Periaqueductal gray
nTPM: 5.4
Samples: 3

Max nTPM: 7.7
Min nTPM: 4.1
Sample B Female 4.4
Sample C Male 7.7
Sample D Male 4.1
Superior colliculi
nTPM: 3.6
Samples: 4

Max nTPM: 7.7
Min nTPM: 1.4
Sample A Female 7.7
Sample B Female 1.6
Sample C Male 1.4
Sample D Male 3.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 43.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 43.9
Samples: 4

Max nTPM: 44.7
Min nTPM: 42.9
Sample A Male 44.7
Sample B Male 43.4
Sample C Female 42.9
Sample D Female 44.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 6.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 6.4
67881761 Antisense, RP_040920_02_F09, Mouse strain C57BL/6J (56 days, male) 6.6
70744516 Antisense, RP_050725_02_B09, Mouse strain C57BL/6J (56 days, male) 6.1

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