HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
Mouse brain, Intensity
Hippocampal formationi 		97.740
RNA expressioni
Consensus:19.1 nTPM
HPA Brain:23.8 nTPM
GTEx:19.1 nTPM
FANTOM5:6.0 Scaled Tags Per Million
Pig:12.8 nTPM
Mouse:31.3 nTPM
Allen mouse:0.3 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA039480Antibody HPA043904
Glial cells Not detectedNot detected
Neuronal cells LowHigh




HIPPOCAMPAL FORMATION - Mouse brain profilei , antibody HPA039480
Hippocampal formation mean intensity 97.740
intensityi
FRONT BACK
Polymorph layer of the dentate gyrus 93.775
Molecular layer of the dentate gyrus 89.671
Granular dentate gyrus 69.661
CA1 - oriens layer 84.595
CA1 - pyramidal layer 82.558
CA1 - radiatum layer 77.761
CA2 - oriens layer 73.482
CA2 - pyramidal layer 71.363
CA2 - radiatum layer 79.544
CA3 - oriens layer 63.631
CA3 - pyramidal layer 52.546
CA3 - radiatum layer 83.659
Stratum lucidum 60.537
Lacunosum moleculare 97.740
Subiculum 93.148

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 23.8
Sample id Sample description nTPM
Hippocampus
nTPM: 20.0
2529 Female, age 94, left hemisphere 25.7
1911 Female, age 85, right hemisphere 23.9
2148 Female, age 91, left hemisphere 20.6
1898 Male, age 80, left hemisphere 17.5
1855 Male, age 76, left hemisphere 16.2
2621 Female, age 67, right hemisphere 15.9
Dentate gyrus
nTPM: 18.2
2530 Female, age 94, left hemisphere 22.3
2010 Male, age 76, both hemispheres 22.0
2528 Male, age 74, both hemispheres 18.9
2246 Female, age 85, both hemispheres 18.4
1927 Female, age 91, both hemispheres 14.6
2531 Female, age 67, both hemispheres 12.9
Entorhinal gyrus
nTPM: 21.2
2117 Female, age 91, right hemisphere 29.1
2764 Male, age 80, right hemisphere 23.8
1787 Male, age 76, left hemisphere 21.6
2686 Male, age 75, right hemisphere 19.3
2613 Female, age 94, left hemisphere 16.7
1938 Female, age 85, left hemisphere 16.6
Hippocampus, CA1
nTPM: 17.9
2527 Male, age 74, both hemispheres 21.7
2082 Female, age 91, right hemisphere 20.5
1873 Female, age 85, both hemispheres 20.0
2749 Male, age 80, left hemisphere 17.5
2045 Male, age 76, both hemispheres 9.9
Hippocampus, CA2
nTPM: 19.9
1940 Female, age 85, left hemisphere 26.0
1963 Male, age 80, left hemisphere 23.3
2249 Male, age 74, both hemispheres 22.6
2113 Female, age 91, right hemisphere 19.3
2437 Female, age 94, left hemisphere 15.8
1892 Male, age 76, both hemispheres 12.4
Hippocampus, CA3
nTPM: 17.0
1891 Female, age 85, both hemispheres 24.5
2436 Male, age 74, both hemispheres 21.1
1867 Male, age 76, both hemispheres 16.5
2137 Male, age 80, left hemisphere 16.1
2861 Female, age 67, both hemispheres 12.2
2620 Female, age 94, left hemisphere 11.7
Parahippocampal cortex
nTPM: 17.3
2692 Male, age 74, both hemispheres 24.5
2532 Female, age 72, left hemisphere 21.2
1990 Female, age 91, right hemisphere 20.8
2245 Female, age 91, both hemispheres 17.6
2018 Male, age 76, both hemispheres 17.1
1933 Female, age 85, both hemispheres 16.0
1850 Male, age 80, both hemispheres 15.9
2250 Female, age 67, right hemisphere 13.6
2622 Female, age 67, right hemisphere 13.6
2693 Female, age 94, both hemispheres 12.3
Perirhinal gyrus
nTPM: 13.0
1794 Male, age 80, right hemisphere 14.2
2848 Male, age 76, right hemisphere 14.0
1847 Female, age 91, left hemisphere 13.2
2521 Female, age 94, right hemisphere 12.8
1841 Female, age 85, right hemisphere 10.8
Subiculum
nTPM: 23.8
2042 Male, age 76, both hemispheres 33.2
1901 Male, age 80, both hemispheres 28.3
2619 Male, age 74, both hemispheres 24.2
2729 Female, age 91, right hemisphere 22.5
1977 Female, age 85, both hemispheres 18.8
2438 Female, age 94, left hemisphere 15.9

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 19.1
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 19.1
Samples: 197

Max nTPM: 45.5
Min nTPM: 4.3
Std nTPM: 6.4
Median nTPM: 18.2
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 45.5
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 39.4
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 34.4
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 33.7
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 33.2
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 32.5
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 32.3
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 30.8
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 29.7
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 29.3
GTEX-1J8Q2-0011-R1a-SM-D4P2D 60-69 years, male 29.2
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 6.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 6.0
FF:10153-102I9 76 years, female 10.0
FF:10169-103B7 60 years, female 2.0

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 12.8
Pig sample Sample description nTPM
Subiculum
nTPM: 9.9
Samples: 4

Max nTPM: 13.1
Min nTPM: 8.5
Sample A Female 13.1
Sample B Female 8.5
Sample C Male 8.8
Sample D Male 9.1
Dorsal hippocampus
nTPM: 12.8
Samples: 4

Max nTPM: 18.1
Min nTPM: 7.2
Sample A Female 18.1
Sample B Female 9.9
Sample C Male 15.9
Sample D Male 7.2
Entorhinal cortex
nTPM: 8.5
Samples: 4

Max nTPM: 9.4
Min nTPM: 7.2
Sample A Female 8.9
Sample B Female 9.4
Sample C Male 8.5
Sample D Male 7.2
Ventral hippocampus
nTPM: 11.6
Samples: 4

Max nTPM: 14.2
Min nTPM: 8.2
Sample A Female 12.7
Sample B Female 8.2
Sample C Male 14.2
Sample D Male 11.3

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 31.3
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 31.3
Samples: 4

Max nTPM: 38.1
Min nTPM: 24.5
Sample A Male 38.1
Sample B Male 37.6
Sample C Female 24.9
Sample D Female 24.5
Hippocampal formation
nTPM: 20.1
Samples: 4

Max nTPM: 24.5
Min nTPM: 17.0
Sample A Male 20.9
Sample B Male 17.0
Sample C Female 17.8
Sample D Female 24.5

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 0.3
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.3
513493 Antisense, RP_040810_02_A03, Mouse strain C57BL/6J (56 days, male) 0.3

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