MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:58.1 nTPM
HPA Brain:59.3 nTPM
GTEx:58.1 nTPM
FANTOM5:24.7 Scaled Tags Per Million
Mouse:38.0 nTPM
Allen mouse:4.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 59.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 51.0
2666 Male, age 74, left hemisphere 73.7
2411 Female, age 72, unknown 72.5
1827 Male, age 72, unknown 64.2
2019 Male, age 18, unknown 52.5
2219 Male, age 76, both hemispheres 48.5
1870 Female, age 42, unknown 45.2
2828 Female, age 72, unknown 42.1
1833 Male, age 53, unknown 40.1
2586 Male, age 75, left hemisphere 36.8
1830 Male, age 51, unknown 34.4
Dorsal raphe nucleus
nTPM: 51.6
2298 Female, age 72, unknown 80.1
2047 Male, age 72, unknown 54.7
2750 Male, age 76, both hemispheres 47.7
1828 Male, age 53, unknown 47.2
2016 Female, age 72, unknown 28.3
Inferior colliculus
nTPM: 53.6
2097 Female, age 72, unknown 71.8
1890 Male, age 53, unknown 52.3
1848 Female, age 42, unknown 48.4
2849 Male, age 72, unknown 41.8
Median raphe nucleus
nTPM: 56.8
2220 Male, age 76, midline 56.8
Periaquaductal grey, anterior
nTPM: 50.7
1947 Male, age 18, unknown 56.3
1795 Male, age 51, unknown 50.1
2502 Female, age 75, unknown 45.8
Periaquaductal grey, dorsal
nTPM: 45.9
2464 Female, age 72, unknown 55.9
1840 Male, age 53, unknown 50.9
1831 Male, age 72, unknown 40.8
2850 Male, age 76, both hemispheres 35.9
Periaquaductal grey, lateral
nTPM: 41.1
2272 Male, age 74, both hemispheres 42.0
2140 Male, age 76, both hemispheres 41.1
2053 Male, age 18, unknown 40.3
Pretectal area
nTPM: 59.3
1816 Male, age 51, unknown 78.9
2007 Male, age 72, unknown 78.7
1817 Female, age 42, unknown 73.7
1944 Female, age 72, unknown 73.4
2224 Female, age 72, unknown 64.9
2667 Female, age 75, unknown 63.5
1815 Male, age 53, unknown 57.8
2273 Male, age 74, both hemispheres 48.7
2825 Male, age 18, unknown 43.6
2316 Male, age 76, right hemisphere 41.2
2407 Male, age 75, both hemispheres 28.2
Red nucleus
nTPM: 42.1
1821 Female, age 72, unknown 58.5
2725 Female, age 75, unknown 54.4
2584 Male, age 75, left hemisphere 52.1
2785 Male, age 18, unknown 47.9
1954 Female, age 42, unknown 46.1
1904 Male, age 53, unknown 38.3
2227 Male, age 72, unknown 37.5
1865 Male, age 51, unknown 36.8
2769 Male, age 72, unknown 36.5
2588 Male, age 74, left hemisphere 35.6
2823 Male, age 76, right hemisphere 33.2
2503 Female, age 72, unknown 28.0
Substantia nigra
nTPM: 58.3
1916 Female, age 42, unknown 84.2
1889 Female, age 72, unknown 73.3
2241 Male, age 72, unknown 72.5
1851 Male, age 51, unknown 70.3
1941 Male, age 53, unknown 68.7
2665 Male, age 74, both hemispheres 65.3
2590 Female, age 75, unknown 42.3
2699 Male, age 18, unknown 38.8
2409 Female, age 72, unknown 36.9
2583 Male, age 75, right hemisphere 30.2
Superior colliculus
nTPM: 47.1
2087 Female, age 72, unknown 72.8
2261 Male, age 18, unknown 61.2
1895 Male, age 76, right hemisphere 55.7
2587 Male, age 74, left hemisphere 55.0
1796 Male, age 53, unknown 50.9
1839 Male, age 51, unknown 46.2
2668 Female, age 75, unknown 43.6
1913 Female, age 42, unknown 33.2
1995 Male, age 72, unknown 28.8
2664 Male, age 75, both hemispheres 23.7
Ventral tegmental area
nTPM: 57.8
2410 Female, age 72, unknown 85.6
1915 Female, age 42, unknown 64.7
2218 Male, age 76, both hemispheres 63.9
1942 Male, age 51, unknown 49.1
2021 Male, age 53, unknown 47.2
2223 Female, age 72, unknown 36.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 58.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 58.1
Samples: 139

Max nTPM: 208.2
Min nTPM: 21.7
Std nTPM: 35.8
Median nTPM: 44.0
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 208.2
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 190.5
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 171.1
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 166.5
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 137.7
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 134.9
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 130.8
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 128.4
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 125.9
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 125.6
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 124.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 24.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 24.7
FF:10158-103A5 76 years, female 24.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 38.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 38.0
Samples: 4

Max nTPM: 41.6
Min nTPM: 31.8
Sample A Male 41.6
Sample B Male 40.1
Sample C Female 31.8
Sample D Female 38.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 4.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.1
68666553 Antisense, RP_050126_02_E04, Mouse strain C57BL/6J (56 days, male) 4.1

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