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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
820.1
nTPM
Monaco:
140.5
nTPM
Schmiedel:
88.7
TPM
T-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max nTPM
820.1
HPA sample
nTPM
gdT-cell nTPM: 407.1
Samples: 6
Max nTPM: 583.5
Min nTPM: 213.4
P10809_1007
213.4
P10809_1022
379.2
P10809_1041
583.5
P10809_1060
369.2
P10809_1077
413.6
P10809_1098
483.6
MAIT T-cell nTPM: 484.2
Samples: 6
Max nTPM: 701.7
Min nTPM: 238.4
P10809_1006
238.4
P10809_1024
535.8
P10809_1043
561.2
P10809_1062
470.4
P10809_1083
397.5
P10809_1097
701.7
Memory CD4 T-cell nTPM: 499.7
Samples: 6
Max nTPM: 582.1
Min nTPM: 281.2
P10809_1014
281.2
P10809_1026
582.1
P10809_1045
515.4
P10809_1064
541.0
P10809_1086
515.9
P10809_1113
562.3
Memory CD8 T-cell nTPM: 468.2
Samples: 5
Max nTPM: 575.5
Min nTPM: 252.3
P10809_1012
252.3
P10809_1027
458.7
P10809_1046
495.0
P10809_1065
559.4
P10809_1111
575.5
Naive CD4 T-cell nTPM: 540.1
Samples: 6
Max nTPM: 974.5
Min nTPM: 242.4
P10809_1015
242.4
P10809_1030
557.2
P10809_1049
974.5
P10809_1068
465.2
P10809_1085
474.2
P10809_1112
527.1
Naive CD8 T-cell nTPM: 515.8
Samples: 6
Max nTPM: 645.3
Min nTPM: 310.0
P10809_1016
310.0
P10809_1031
645.3
P10809_1050
517.8
P10809_1069
601.1
P10809_1087
482.8
P10809_1110
537.7
T-reg nTPM: 820.1
Samples: 6
Max nTPM: 1304.0
Min nTPM: 423.6
P10809_1018
423.6
P10809_1037
810.2
P10809_1056
1304.0
P10809_1075
801.4
P10809_1094
721.5
P10809_1106
859.7
T-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max nTPM
140.5
Monaco sample
nTPM
Central memory CD8 T-cell nTPM: 86.9
Samples: 4
Max nTPM: 110.5
Min nTPM: 61.3
RHH5202_R3573
61.3
RHH5230_R3602
71.0
RHH5259_R3631
104.6
RHH5288_R3660
110.5
Effector memory CD8 T-cell nTPM: 66.6
Samples: 4
Max nTPM: 92.1
Min nTPM: 53.1
RHH5203_R3574
54.9
RHH5231_R3603
66.4
RHH5260_R3632
92.1
RHH5289_R3661
53.1
MAIT T-cell nTPM: 93.6
Samples: 4
Max nTPM: 116.9
Min nTPM: 78.3
RHH5233_R3605
78.3
RHH5205_R3576
92.7
RHH5262_R3634
116.9
RHH5297_R3663
86.3
Memory CD4 T-cell TFH nTPM: 92.2
Samples: 4
Max nTPM: 150.0
Min nTPM: 56.7
RHH5300_R3666
74.8
RHH5236_R3608
150.0
RHH5265_R3637
56.7
RHH5208_R3579
87.4
Memory CD4 T-cell Th1 nTPM: 103.5
Samples: 4
Max nTPM: 161.5
Min nTPM: 46.7
RHH5210_R3581
46.7
RHH5302_R3668
161.5
RHH5238_R3610
121.3
RHH5267_R3639
84.3
Memory CD4 T-cell Th1/Th17 nTPM: 101.3
Samples: 4
Max nTPM: 117.1
Min nTPM: 85.5
RHH5303_R3669
111.1
RHH5211_R3582
91.4
RHH5239_R3611
85.5
RHH5268_R3640
117.1
Memory CD4 T-cell Th17 nTPM: 80.6
Samples: 4
Max nTPM: 108.3
Min nTPM: 67.8
RHH5304_R3670
108.3
RHH5212_R3583
67.8
RHH5240_R3612
76.9
RHH5269_R3641
69.2
Memory CD4 T-cell Th2 nTPM: 83.2
Samples: 4
Max nTPM: 99.4
Min nTPM: 69.8
RHH5305_R3671
91.5
RHH5213_R3584
71.9
RHH5241_R3613
69.8
RHH5270_R3642
99.4
Naive CD4 T-cell nTPM: 98.9
Samples: 4
Max nTPM: 159.4
Min nTPM: 55.9
RHH5306_R3672
120.4
RHH5214_R3585
159.4
RHH5242_R3614
55.9
RHH5271_R3643
60.0
Naive CD8 T-cell nTPM: 84.6
Samples: 4
Max nTPM: 93.4
Min nTPM: 80.8
RHH5201_R3572
82.5
RHH5229_R3601
80.8
RHH5258_R3630
81.7
RHH5287_R3659
93.4
Non-Vd2 gdTCR nTPM: 89.9
Samples: 4
Max nTPM: 123.2
Min nTPM: 61.8
RHH5235_R3607
61.8
RHH5264_R3636
88.2
RHH5207_R3578
86.3
RHH5299_R3665
123.2
T-reg nTPM: 92.9
Samples: 4
Max nTPM: 123.4
Min nTPM: 65.8
RHH5301_R3667
123.4
RHH5237_R3609
89.0
RHH5266_R3638
65.8
RHH5209_R3580
93.2
Terminal effector memory CD4 T-cell nTPM: 81.9
Samples: 2
Max nTPM: 96.0
Min nTPM: 67.8
RHH5243_R3615
67.8
RHH5272_R3644
96.0
Terminal effector memory CD8 T-cell nTPM: 132.9
Samples: 4
Max nTPM: 244.0
Min nTPM: 67.4
RHH5232_R3604
67.4
RHH5204_R3575
244.0
RHH5261_R3633
130.0
RHH5296_R3662
90.3
Vd2 gdTCR nTPM: 140.5
Samples: 4
Max nTPM: 235.0
Min nTPM: 70.3
RHH5234_R3606
70.3
RHH5206_R3577
235.0
RHH5263_R3635
110.2
RHH5298_R3664
146.5
T-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
The Human Protein Atlas project is funded
