MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:17.0 nTPM
HPA Brain:22.4 nTPM
GTEx:17.0 nTPM
FANTOM5:26.7 Scaled Tags Per Million
Pig:10.5 nTPM
Mouse:12.2 nTPM
Allen mouse:0.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 22.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 20.7
2019 Male, age 18, unknown 27.4
2411 Female, age 72, unknown 24.2
1827 Male, age 72, unknown 21.1
1870 Female, age 42, unknown 20.6
1830 Male, age 51, unknown 20.2
2586 Male, age 75, left hemisphere 20.1
1833 Male, age 53, unknown 19.3
2666 Male, age 74, left hemisphere 18.6
2219 Male, age 76, both hemispheres 17.9
2828 Female, age 72, unknown 17.9
Dorsal raphe nucleus
nTPM: 19.5
1828 Male, age 53, unknown 22.5
2750 Male, age 76, both hemispheres 21.2
2047 Male, age 72, unknown 20.9
2016 Female, age 72, unknown 17.4
2298 Female, age 72, unknown 15.3
Inferior colliculus
nTPM: 18.2
1890 Male, age 53, unknown 19.0
1848 Female, age 42, unknown 18.4
2097 Female, age 72, unknown 18.2
2849 Male, age 72, unknown 17.3
Median raphe nucleus
nTPM: 22.4
2220 Male, age 76, midline 22.4
Periaquaductal grey, anterior
nTPM: 18.8
1795 Male, age 51, unknown 19.6
1947 Male, age 18, unknown 19.0
2502 Female, age 75, unknown 17.7
Periaquaductal grey, dorsal
nTPM: 14.7
1831 Male, age 72, unknown 15.9
1840 Male, age 53, unknown 15.7
2850 Male, age 76, both hemispheres 13.7
2464 Female, age 72, unknown 13.6
Periaquaductal grey, lateral
nTPM: 15.3
2272 Male, age 74, both hemispheres 16.5
2140 Male, age 76, both hemispheres 14.8
2053 Male, age 18, unknown 14.5
Pretectal area
nTPM: 18.6
1817 Female, age 42, unknown 24.9
2007 Male, age 72, unknown 24.3
2667 Female, age 75, unknown 21.3
1815 Male, age 53, unknown 20.6
1944 Female, age 72, unknown 19.0
2273 Male, age 74, both hemispheres 17.7
1816 Male, age 51, unknown 16.6
2316 Male, age 76, right hemisphere 16.6
2407 Male, age 75, both hemispheres 15.6
2825 Male, age 18, unknown 14.6
2224 Female, age 72, unknown 13.7
Red nucleus
nTPM: 22.4
2588 Male, age 74, left hemisphere 26.8
2785 Male, age 18, unknown 25.2
2227 Male, age 72, unknown 23.2
1821 Female, age 72, unknown 22.8
2503 Female, age 72, unknown 22.7
1865 Male, age 51, unknown 22.6
2769 Male, age 72, unknown 22.4
2725 Female, age 75, unknown 22.2
1954 Female, age 42, unknown 20.9
2584 Male, age 75, left hemisphere 20.7
2823 Male, age 76, right hemisphere 20.5
1904 Male, age 53, unknown 18.8
Substantia nigra
nTPM: 19.2
2665 Male, age 74, both hemispheres 23.3
2409 Female, age 72, unknown 22.6
1889 Female, age 72, unknown 21.7
2583 Male, age 75, right hemisphere 20.2
1941 Male, age 53, unknown 19.9
1916 Female, age 42, unknown 18.9
1851 Male, age 51, unknown 18.7
2590 Female, age 75, unknown 18.7
2699 Male, age 18, unknown 15.1
2241 Male, age 72, unknown 13.4
Superior colliculus
nTPM: 18.1
2587 Male, age 74, left hemisphere 21.0
1839 Male, age 51, unknown 20.7
2261 Male, age 18, unknown 19.5
1895 Male, age 76, right hemisphere 18.5
2664 Male, age 75, both hemispheres 18.2
1913 Female, age 42, unknown 17.6
1796 Male, age 53, unknown 17.5
2668 Female, age 75, unknown 16.7
1995 Male, age 72, unknown 16.0
2087 Female, age 72, unknown 14.9
Ventral tegmental area
nTPM: 19.6
2223 Female, age 72, unknown 23.1
2410 Female, age 72, unknown 22.3
2218 Male, age 76, both hemispheres 21.2
1942 Male, age 51, unknown 18.1
2021 Male, age 53, unknown 16.5
1915 Female, age 42, unknown 16.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 17.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 17.0
Samples: 139

Max nTPM: 37.1
Min nTPM: 7.5
Std nTPM: 6.0
Median nTPM: 15.4
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 37.1
GTEX-1CB4G-0011-R2a-SM-9QEGQ 60-69 years, male 31.5
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 30.7
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 30.3
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 29.2
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 29.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 28.3
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 28.0
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 27.7
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 27.3
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 27.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 26.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 26.7
FF:10158-103A5 76 years, female 26.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 10.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 10.2
Samples: 4

Max nTPM: 11.6
Min nTPM: 9.0
Sample A Female 10.8
Sample B Female 9.3
Sample C Male 11.6
Sample D Male 9.0
Midbrain
nTPM: 10.5
Samples: 4

Max nTPM: 12.5
Min nTPM: 8.8
Sample A Female 11.0
Sample B Female 8.8
Sample C Male 9.6
Sample D Male 12.5
Periaqueductal gray
nTPM: 10.2
Samples: 3

Max nTPM: 10.7
Min nTPM: 9.4
Sample B Female 9.4
Sample C Male 10.7
Sample D Male 10.5
Superior colliculi
nTPM: 9.8
Samples: 4

Max nTPM: 11.5
Min nTPM: 7.1
Sample A Female 11.5
Sample B Female 7.1
Sample C Male 9.7
Sample D Male 10.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 12.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 12.2
Samples: 4

Max nTPM: 13.3
Min nTPM: 10.2
Sample A Male 13.3
Sample B Male 12.6
Sample C Female 10.2
Sample D Female 12.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.6
68637772 Antisense, RP_050126_01_E12, Mouse strain C57BL/6J (56 days, male) 0.6

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