MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:1.9 nTPM
HPA Brain:17.6 nTPM
GTEx:1.9 nTPM
FANTOM5:16.6 Scaled Tags Per Million
Pig:12.7 nTPM
Mouse:1.6 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 17.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 11.9
1830 Male, age 51, unknown 14.4
1833 Male, age 53, unknown 14.1
2019 Male, age 18, unknown 14.1
2411 Female, age 72, unknown 12.7
2828 Female, age 72, unknown 11.9
1827 Male, age 72, unknown 11.3
2666 Male, age 74, left hemisphere 10.9
1870 Female, age 42, unknown 10.7
2586 Male, age 75, left hemisphere 10.4
2219 Male, age 76, both hemispheres 8.2
Dorsal raphe nucleus
nTPM: 10.2
2750 Male, age 76, both hemispheres 12.8
2016 Female, age 72, unknown 10.9
1828 Male, age 53, unknown 10.0
2047 Male, age 72, unknown 9.6
2298 Female, age 72, unknown 7.7
Inferior colliculus
nTPM: 12.7
1848 Female, age 42, unknown 13.9
1890 Male, age 53, unknown 13.1
2849 Male, age 72, unknown 12.9
2097 Female, age 72, unknown 11.1
Median raphe nucleus
nTPM: 9.6
2220 Male, age 76, midline 9.6
Periaquaductal grey, anterior
nTPM: 10.7
2502 Female, age 75, unknown 12.1
1947 Male, age 18, unknown 11.3
1795 Male, age 51, unknown 8.6
Periaquaductal grey, dorsal
nTPM: 10.0
2464 Female, age 72, unknown 12.2
1831 Male, age 72, unknown 10.4
1840 Male, age 53, unknown 9.0
2850 Male, age 76, both hemispheres 8.3
Periaquaductal grey, lateral
nTPM: 10.5
2272 Male, age 74, both hemispheres 11.0
2053 Male, age 18, unknown 10.9
2140 Male, age 76, both hemispheres 9.6
Pretectal area
nTPM: 11.0
2316 Male, age 76, right hemisphere 14.3
1815 Male, age 53, unknown 11.6
2407 Male, age 75, both hemispheres 11.6
2825 Male, age 18, unknown 11.5
1817 Female, age 42, unknown 11.2
1816 Male, age 51, unknown 10.9
2667 Female, age 75, unknown 10.8
2273 Male, age 74, both hemispheres 10.6
2007 Male, age 72, unknown 10.3
1944 Female, age 72, unknown 9.1
2224 Female, age 72, unknown 8.9
Red nucleus
nTPM: 17.6
2823 Male, age 76, right hemisphere 21.5
2503 Female, age 72, unknown 20.5
1904 Male, age 53, unknown 19.3
1954 Female, age 42, unknown 19.2
1865 Male, age 51, unknown 19.1
2769 Male, age 72, unknown 18.1
1821 Female, age 72, unknown 17.7
2227 Male, age 72, unknown 16.9
2588 Male, age 74, left hemisphere 16.6
2725 Female, age 75, unknown 15.2
2785 Male, age 18, unknown 14.5
2584 Male, age 75, left hemisphere 12.3
Substantia nigra
nTPM: 10.9
2583 Male, age 75, right hemisphere 13.0
2590 Female, age 75, unknown 12.8
2409 Female, age 72, unknown 12.7
1889 Female, age 72, unknown 11.9
1941 Male, age 53, unknown 10.7
2241 Male, age 72, unknown 10.6
1851 Male, age 51, unknown 10.1
2699 Male, age 18, unknown 9.7
1916 Female, age 42, unknown 9.0
2665 Male, age 74, both hemispheres 8.0
Superior colliculus
nTPM: 11.3
1895 Male, age 76, right hemisphere 15.4
2087 Female, age 72, unknown 12.2
1995 Male, age 72, unknown 11.9
1839 Male, age 51, unknown 11.7
1913 Female, age 42, unknown 11.5
2587 Male, age 74, left hemisphere 10.6
2261 Male, age 18, unknown 10.5
2664 Male, age 75, both hemispheres 9.6
1796 Male, age 53, unknown 9.5
2668 Female, age 75, unknown 9.4
Ventral tegmental area
nTPM: 11.2
2410 Female, age 72, unknown 13.9
2223 Female, age 72, unknown 11.6
2218 Male, age 76, both hemispheres 11.2
1915 Female, age 42, unknown 10.5
1942 Male, age 51, unknown 10.1
2021 Male, age 53, unknown 9.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 1.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 1.9
Samples: 139

Max nTPM: 3.9
Min nTPM: 0.6
Std nTPM: 0.6
Median nTPM: 1.8
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 3.9
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 3.8
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 3.6
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 3.6
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 3.2
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 3.2
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 3.1
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 3.0
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 3.0
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 3.0
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 2.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 16.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 16.6
FF:10158-103A5 76 years, female 16.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 12.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 9.6
Samples: 4

Max nTPM: 22.7
Min nTPM: 4.8
Sample A Female 5.0
Sample B Female 22.7
Sample C Male 4.8
Sample D Male 5.8
Midbrain
nTPM: 5.7
Samples: 4

Max nTPM: 6.4
Min nTPM: 4.8
Sample A Female 4.8
Sample B Female 5.4
Sample C Male 6.4
Sample D Male 6.3
Periaqueductal gray
nTPM: 3.9
Samples: 3

Max nTPM: 4.5
Min nTPM: 3.6
Sample B Female 4.5
Sample C Male 3.7
Sample D Male 3.6
Superior colliculi
nTPM: 12.7
Samples: 4

Max nTPM: 27.2
Min nTPM: 5.4
Sample A Female 12.0
Sample B Female 27.2
Sample C Male 5.4
Sample D Male 6.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 1.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 1.6
Samples: 4

Max nTPM: 1.9
Min nTPM: 1.4
Sample A Male 1.4
Sample B Male 1.9
Sample C Female 1.7
Sample D Female 1.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
69672300 Antisense, RP_050428_03_D12, Mouse strain C57BL/6J (56 days, male) 0.0

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