MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:493.1 nTPM
HPA Brain:1023.0 nTPM
GTEx:493.1 nTPM
FANTOM5:1397.5 Scaled Tags Per Million
Pig:936.3 nTPM
Mouse:784.8 nTPM
Allen mouse:20.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 1023.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 785.1
2019 Male, age 18, unknown 1298.2
2828 Female, age 72, unknown 1009.5
2586 Male, age 75, left hemisphere 982.0
1827 Male, age 72, unknown 782.5
2219 Male, age 76, both hemispheres 773.1
2411 Female, age 72, unknown 643.7
1870 Female, age 42, unknown 629.3
1833 Male, age 53, unknown 619.7
1830 Male, age 51, unknown 602.9
2666 Male, age 74, left hemisphere 509.6
Dorsal raphe nucleus
nTPM: 858.0
2298 Female, age 72, unknown 1000.2
1828 Male, age 53, unknown 997.1
2047 Male, age 72, unknown 821.9
2016 Female, age 72, unknown 793.2
2750 Male, age 76, both hemispheres 677.7
Inferior colliculus
nTPM: 893.4
2097 Female, age 72, unknown 1082.5
1890 Male, age 53, unknown 1000.9
1848 Female, age 42, unknown 815.2
2849 Male, age 72, unknown 675.1
Median raphe nucleus
nTPM: 589.0
2220 Male, age 76, midline 589.0
Periaquaductal grey, anterior
nTPM: 834.2
1795 Male, age 51, unknown 886.9
2502 Female, age 75, unknown 883.4
1947 Male, age 18, unknown 732.2
Periaquaductal grey, dorsal
nTPM: 651.2
2850 Male, age 76, both hemispheres 672.9
2464 Female, age 72, unknown 661.2
1840 Male, age 53, unknown 655.0
1831 Male, age 72, unknown 615.7
Periaquaductal grey, lateral
nTPM: 716.5
2272 Male, age 74, both hemispheres 870.2
2140 Male, age 76, both hemispheres 688.6
2053 Male, age 18, unknown 590.7
Pretectal area
nTPM: 1023.0
2667 Female, age 75, unknown 1315.3
2007 Male, age 72, unknown 1300.4
1944 Female, age 72, unknown 1273.2
1817 Female, age 42, unknown 1260.2
1816 Male, age 51, unknown 1215.5
2273 Male, age 74, both hemispheres 1169.6
1815 Male, age 53, unknown 957.6
2316 Male, age 76, right hemisphere 756.7
2407 Male, age 75, both hemispheres 736.0
2224 Female, age 72, unknown 710.2
2825 Male, age 18, unknown 558.2
Red nucleus
nTPM: 910.9
2785 Male, age 18, unknown 1239.2
2503 Female, age 72, unknown 1029.9
1821 Female, age 72, unknown 1016.6
2227 Male, age 72, unknown 986.5
2769 Male, age 72, unknown 982.8
1954 Female, age 42, unknown 896.6
1904 Male, age 53, unknown 864.8
2823 Male, age 76, right hemisphere 857.7
1865 Male, age 51, unknown 854.3
2725 Female, age 75, unknown 831.6
2588 Male, age 74, left hemisphere 772.1
2584 Male, age 75, left hemisphere 598.9
Substantia nigra
nTPM: 854.9
1916 Female, age 42, unknown 1161.0
1889 Female, age 72, unknown 1105.1
1851 Male, age 51, unknown 977.7
1941 Male, age 53, unknown 947.8
2583 Male, age 75, right hemisphere 833.0
2699 Male, age 18, unknown 781.7
2665 Male, age 74, both hemispheres 718.6
2241 Male, age 72, unknown 708.0
2590 Female, age 75, unknown 668.1
2409 Female, age 72, unknown 647.9
Superior colliculus
nTPM: 850.8
2087 Female, age 72, unknown 1133.1
1796 Male, age 53, unknown 938.3
2664 Male, age 75, both hemispheres 915.4
2261 Male, age 18, unknown 910.1
1995 Male, age 72, unknown 859.0
2668 Female, age 75, unknown 801.7
2587 Male, age 74, left hemisphere 753.7
1913 Female, age 42, unknown 747.0
1839 Male, age 51, unknown 746.5
1895 Male, age 76, right hemisphere 703.0
Ventral tegmental area
nTPM: 767.2
1915 Female, age 42, unknown 873.7
2410 Female, age 72, unknown 853.0
2218 Male, age 76, both hemispheres 842.3
1942 Male, age 51, unknown 732.6
2223 Female, age 72, unknown 720.2
2021 Male, age 53, unknown 581.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 493.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 493.1
Samples: 139

Max nTPM: 1026.8
Min nTPM: 127.8
Std nTPM: 170.4
Median nTPM: 472.9
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 1026.8
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 932.1
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 884.1
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 875.3
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 868.2
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 849.9
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 821.1
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 792.0
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 778.0
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 773.8
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 744.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 1397.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 1397.5
FF:10158-103A5 76 years, female 1397.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 936.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 715.7
Samples: 4

Max nTPM: 877.5
Min nTPM: 487.2
Sample A Female 877.5
Sample B Female 487.2
Sample C Male 716.0
Sample D Male 782.0
Midbrain
nTPM: 843.4
Samples: 4

Max nTPM: 938.4
Min nTPM: 637.3
Sample A Female 919.2
Sample B Female 637.3
Sample C Male 878.7
Sample D Male 938.4
Periaqueductal gray
nTPM: 591.0
Samples: 3

Max nTPM: 692.0
Min nTPM: 458.2
Sample B Female 622.8
Sample C Male 692.0
Sample D Male 458.2
Superior colliculi
nTPM: 936.4
Samples: 4

Max nTPM: 1312.9
Min nTPM: 567.8
Sample A Female 1312.9
Sample B Female 567.8
Sample C Male 1053.5
Sample D Male 811.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 784.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 784.8
Samples: 4

Max nTPM: 972.8
Min nTPM: 666.4
Sample A Male 972.8
Sample B Male 710.4
Sample C Female 666.4
Sample D Female 789.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 20.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 20.4
70927826 Antisense, RP_050725_01_B02, Mouse strain C57BL/6J (56 days, male) 21.3
393211 Antisense, RP_040804_02_D11, Mouse strain C57BL/6J (56 days, male) 19.4

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