HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:45.4 nTPM
HPA Brain:48.5 nTPM
GTEx:45.4 nTPM
FANTOM5:78.0 Scaled Tags Per Million
Pig:114.0 nTPM
Mouse:168.9 nTPM
Allen mouse:22.5 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA003197Antibody HPA003198
Glial cells Not detectedLow
Neuronal cells MediumMedium





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 48.5
Sample id Sample description nTPM
Hippocampus
nTPM: 43.2
1898 Male, age 80, left hemisphere 61.3
2621 Female, age 67, right hemisphere 42.9
2529 Female, age 94, left hemisphere 41.8
1855 Male, age 76, left hemisphere 38.7
2148 Female, age 91, left hemisphere 37.5
1911 Female, age 85, right hemisphere 37.2
Dentate gyrus
nTPM: 40.4
1927 Female, age 91, both hemispheres 53.2
2010 Male, age 76, both hemispheres 47.8
2528 Male, age 74, both hemispheres 43.4
2246 Female, age 85, both hemispheres 35.6
2530 Female, age 94, left hemisphere 31.2
2531 Female, age 67, both hemispheres 30.9
Entorhinal gyrus
nTPM: 37.4
1938 Female, age 85, left hemisphere 46.5
2764 Male, age 80, right hemisphere 41.7
2117 Female, age 91, right hemisphere 39.0
1787 Male, age 76, left hemisphere 38.3
2686 Male, age 75, right hemisphere 33.4
2613 Female, age 94, left hemisphere 25.6
Hippocampus, CA1
nTPM: 48.5
2749 Male, age 80, left hemisphere 74.0
1873 Female, age 85, both hemispheres 50.5
2045 Male, age 76, both hemispheres 43.1
2527 Male, age 74, both hemispheres 42.8
2082 Female, age 91, right hemisphere 32.2
Hippocampus, CA2
nTPM: 43.7
1892 Male, age 76, both hemispheres 58.6
1963 Male, age 80, left hemisphere 56.4
2249 Male, age 74, both hemispheres 46.9
2113 Female, age 91, right hemisphere 34.1
1940 Female, age 85, left hemisphere 33.4
2437 Female, age 94, left hemisphere 33.1
Hippocampus, CA3
nTPM: 45.0
1867 Male, age 76, both hemispheres 55.1
2436 Male, age 74, both hemispheres 54.7
2137 Male, age 80, left hemisphere 52.6
1891 Female, age 85, both hemispheres 39.5
2620 Female, age 94, left hemisphere 34.4
2861 Female, age 67, both hemispheres 33.5
Parahippocampal cortex
nTPM: 39.3
1850 Male, age 80, both hemispheres 52.1
1933 Female, age 85, both hemispheres 46.1
1990 Female, age 91, right hemisphere 45.8
2250 Female, age 67, right hemisphere 41.1
2245 Female, age 91, both hemispheres 38.5
2018 Male, age 76, both hemispheres 37.6
2532 Female, age 72, left hemisphere 35.8
2692 Male, age 74, both hemispheres 32.9
2622 Female, age 67, right hemisphere 32.6
2693 Female, age 94, both hemispheres 30.4
Perirhinal gyrus
nTPM: 45.9
1847 Female, age 91, left hemisphere 58.4
1841 Female, age 85, right hemisphere 50.3
1794 Male, age 80, right hemisphere 47.4
2521 Female, age 94, right hemisphere 38.5
2848 Male, age 76, right hemisphere 34.6
Subiculum
nTPM: 39.2
1901 Male, age 80, both hemispheres 45.4
1977 Female, age 85, both hemispheres 42.4
2042 Male, age 76, both hemispheres 41.1
2729 Female, age 91, right hemisphere 36.9
2619 Male, age 74, both hemispheres 35.5
2438 Female, age 94, left hemisphere 34.2

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 45.4
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 45.4
Samples: 197

Max nTPM: 78.8
Min nTPM: 23.7
Std nTPM: 11.0
Median nTPM: 43.3
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 78.8
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 77.8
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 74.5
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 70.8
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 70.6
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 70.1
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 69.9
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 69.1
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 68.5
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 67.5
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 66.7
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 78.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 78.0
FF:10169-103B7 60 years, female 94.5
FF:10153-102I9 76 years, female 61.6

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 114.0
Pig sample Sample description nTPM
Subiculum
nTPM: 100.0
Samples: 4

Max nTPM: 124.4
Min nTPM: 88.5
Sample A Female 124.4
Sample B Female 90.7
Sample C Male 88.5
Sample D Male 96.4
Dorsal hippocampus
nTPM: 114.0
Samples: 4

Max nTPM: 140.5
Min nTPM: 92.1
Sample A Female 140.5
Sample B Female 115.4
Sample C Male 108.0
Sample D Male 92.1
Entorhinal cortex
nTPM: 94.5
Samples: 4

Max nTPM: 118.3
Min nTPM: 74.8
Sample A Female 95.5
Sample B Female 118.3
Sample C Male 89.2
Sample D Male 74.8
Ventral hippocampus
nTPM: 99.3
Samples: 4

Max nTPM: 119.2
Min nTPM: 82.9
Sample A Female 119.2
Sample B Female 82.9
Sample C Male 90.6
Sample D Male 104.5

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 168.9
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 151.8
Samples: 4

Max nTPM: 159.9
Min nTPM: 143.0
Sample A Male 143.0
Sample B Male 145.3
Sample C Female 158.8
Sample D Female 159.9
Hippocampal formation
nTPM: 168.9
Samples: 4

Max nTPM: 173.9
Min nTPM: 164.0
Sample A Male 171.8
Sample B Male 165.8
Sample C Female 173.9
Sample D Female 164.0

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 22.5
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 22.5
356082 Antisense, RP_040617_01_G03, Mouse strain C57BL/6J (56 days, male) 22.5
293916 Antisense, RP_040617_01_G03, Mouse strain C57BL/6J (56 days, male) 17.9

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