HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Low
RNA expressioni
Consensus:6.5 nTPM
HPA Brain:21.2 nTPM
GTEx:6.5 nTPM
FANTOM5:25.2 Scaled Tags Per Million
Pig:19.4 nTPM
Mouse:6.3 nTPM
Allen mouse:0.7 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA003263
Glial cells Low
Neuronal cells Low



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 21.2
Sample id Sample description nTPM
Hippocampus
nTPM: 20.4
2148 Female, age 91, left hemisphere 23.4
1911 Female, age 85, right hemisphere 22.1
2621 Female, age 67, right hemisphere 20.1
1898 Male, age 80, left hemisphere 19.4
1855 Male, age 76, left hemisphere 19.3
2529 Female, age 94, left hemisphere 17.9
Dentate gyrus
nTPM: 20.9
2010 Male, age 76, both hemispheres 29.2
2528 Male, age 74, both hemispheres 19.9
2246 Female, age 85, both hemispheres 19.6
2530 Female, age 94, left hemisphere 19.5
2531 Female, age 67, both hemispheres 18.7
1927 Female, age 91, both hemispheres 18.6
Entorhinal gyrus
nTPM: 18.7
1787 Male, age 76, left hemisphere 23.7
2117 Female, age 91, right hemisphere 20.9
1938 Female, age 85, left hemisphere 17.8
2764 Male, age 80, right hemisphere 17.6
2613 Female, age 94, left hemisphere 17.0
2686 Male, age 75, right hemisphere 15.4
Hippocampus, CA1
nTPM: 19.6
1873 Female, age 85, both hemispheres 21.9
2045 Male, age 76, both hemispheres 21.1
2082 Female, age 91, right hemisphere 19.8
2527 Male, age 74, both hemispheres 18.3
2749 Male, age 80, left hemisphere 17.1
Hippocampus, CA2
nTPM: 21.0
1940 Female, age 85, left hemisphere 24.2
2113 Female, age 91, right hemisphere 22.1
2249 Male, age 74, both hemispheres 21.4
1963 Male, age 80, left hemisphere 20.6
1892 Male, age 76, both hemispheres 19.2
2437 Female, age 94, left hemisphere 18.4
Hippocampus, CA3
nTPM: 20.2
1867 Male, age 76, both hemispheres 24.3
1891 Female, age 85, both hemispheres 21.3
2137 Male, age 80, left hemisphere 21.3
2620 Female, age 94, left hemisphere 19.3
2436 Male, age 74, both hemispheres 18.2
2861 Female, age 67, both hemispheres 16.5
Parahippocampal cortex
nTPM: 20.6
2018 Male, age 76, both hemispheres 29.8
2693 Female, age 94, both hemispheres 21.8
1933 Female, age 85, both hemispheres 20.3
1990 Female, age 91, right hemisphere 20.3
1850 Male, age 80, both hemispheres 20.0
2245 Female, age 91, both hemispheres 19.9
2692 Male, age 74, both hemispheres 19.4
2250 Female, age 67, right hemisphere 18.8
2532 Female, age 72, left hemisphere 18.0
2622 Female, age 67, right hemisphere 17.7
Perirhinal gyrus
nTPM: 18.8
1794 Male, age 80, right hemisphere 20.9
2521 Female, age 94, right hemisphere 19.8
1841 Female, age 85, right hemisphere 19.1
2848 Male, age 76, right hemisphere 18.5
1847 Female, age 91, left hemisphere 15.9
Subiculum
nTPM: 21.2
2042 Male, age 76, both hemispheres 28.5
1901 Male, age 80, both hemispheres 22.4
1977 Female, age 85, both hemispheres 20.8
2729 Female, age 91, right hemisphere 20.0
2619 Male, age 74, both hemispheres 18.0
2438 Female, age 94, left hemisphere 17.7

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 6.5
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 6.5
Samples: 197

Max nTPM: 15.3
Min nTPM: 3.4
Std nTPM: 2.0
Median nTPM: 6.1
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 15.3
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 14.0
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 13.8
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 12.9
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 12.2
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 12.1
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 11.6
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 11.0
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 10.7
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 10.6
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 10.6
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 25.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 25.2
FF:10169-103B7 60 years, female 29.0
FF:10153-102I9 76 years, female 21.3

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 19.4
Pig sample Sample description nTPM
Subiculum
nTPM: 19.4
Samples: 4

Max nTPM: 21.5
Min nTPM: 15.8
Sample A Female 15.8
Sample B Female 21.5
Sample C Male 19.5
Sample D Male 20.8
Dorsal hippocampus
nTPM: 17.8
Samples: 4

Max nTPM: 19.6
Min nTPM: 15.5
Sample A Female 15.5
Sample B Female 17.9
Sample C Male 19.6
Sample D Male 18.1
Entorhinal cortex
nTPM: 18.6
Samples: 4

Max nTPM: 20.8
Min nTPM: 16.5
Sample A Female 16.5
Sample B Female 20.1
Sample C Male 17.0
Sample D Male 20.8
Ventral hippocampus
nTPM: 18.3
Samples: 4

Max nTPM: 20.3
Min nTPM: 15.9
Sample A Female 17.6
Sample B Female 20.3
Sample C Male 15.9
Sample D Male 19.3

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 6.3
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 5.8
Samples: 4

Max nTPM: 6.5
Min nTPM: 5.5
Sample A Male 5.6
Sample B Male 5.7
Sample C Female 5.5
Sample D Female 6.5
Hippocampal formation
nTPM: 6.3
Samples: 4

Max nTPM: 6.7
Min nTPM: 5.9
Sample A Male 5.9
Sample B Male 6.7
Sample C Female 6.6
Sample D Female 6.1

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 0.7
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.7
69059870 Antisense, RP_050317_04_D02, Mouse strain C57BL/6J (56 days, male) 0.7

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