MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:43.4 nTPM
HPA Brain:99.0 nTPM
GTEx:43.4 nTPM
FANTOM5:168.4 Scaled Tags Per Million
Pig:48.3 nTPM
Mouse:68.8 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 99.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 83.0
2586 Male, age 75, left hemisphere 112.6
2666 Male, age 74, left hemisphere 93.3
1827 Male, age 72, unknown 85.0
2828 Female, age 72, unknown 85.0
2019 Male, age 18, unknown 84.0
1870 Female, age 42, unknown 83.0
1833 Male, age 53, unknown 76.8
1830 Male, age 51, unknown 72.1
2411 Female, age 72, unknown 69.2
2219 Male, age 76, both hemispheres 68.6
Dorsal raphe nucleus
nTPM: 89.2
2016 Female, age 72, unknown 99.7
2298 Female, age 72, unknown 94.8
1828 Male, age 53, unknown 89.5
2047 Male, age 72, unknown 86.4
2750 Male, age 76, both hemispheres 75.4
Inferior colliculus
nTPM: 80.7
2097 Female, age 72, unknown 87.2
1890 Male, age 53, unknown 81.3
2849 Male, age 72, unknown 77.7
1848 Female, age 42, unknown 76.7
Median raphe nucleus
nTPM: 84.4
2220 Male, age 76, midline 84.4
Periaquaductal grey, anterior
nTPM: 88.2
2502 Female, age 75, unknown 96.5
1795 Male, age 51, unknown 87.9
1947 Male, age 18, unknown 80.1
Periaquaductal grey, dorsal
nTPM: 99.0
2850 Male, age 76, both hemispheres 112.4
1840 Male, age 53, unknown 99.5
1831 Male, age 72, unknown 97.7
2464 Female, age 72, unknown 86.3
Periaquaductal grey, lateral
nTPM: 84.7
2140 Male, age 76, both hemispheres 98.8
2053 Male, age 18, unknown 81.4
2272 Male, age 74, both hemispheres 74.1
Pretectal area
nTPM: 92.3
1816 Male, age 51, unknown 110.6
1815 Male, age 53, unknown 106.7
1944 Female, age 72, unknown 105.6
1817 Female, age 42, unknown 103.1
2007 Male, age 72, unknown 97.2
2224 Female, age 72, unknown 89.8
2273 Male, age 74, both hemispheres 84.9
2667 Female, age 75, unknown 84.2
2407 Male, age 75, both hemispheres 80.3
2825 Male, age 18, unknown 80.0
2316 Male, age 76, right hemisphere 72.7
Red nucleus
nTPM: 78.3
2503 Female, age 72, unknown 87.9
1821 Female, age 72, unknown 85.9
2785 Male, age 18, unknown 82.8
1904 Male, age 53, unknown 82.6
2725 Female, age 75, unknown 79.7
1865 Male, age 51, unknown 78.0
1954 Female, age 42, unknown 77.3
2588 Male, age 74, left hemisphere 76.2
2823 Male, age 76, right hemisphere 74.8
2584 Male, age 75, left hemisphere 72.8
2227 Male, age 72, unknown 71.7
2769 Male, age 72, unknown 69.6
Substantia nigra
nTPM: 83.6
1889 Female, age 72, unknown 95.3
2699 Male, age 18, unknown 93.3
2409 Female, age 72, unknown 89.5
2583 Male, age 75, right hemisphere 84.8
2241 Male, age 72, unknown 84.6
2665 Male, age 74, both hemispheres 84.5
1851 Male, age 51, unknown 83.1
1916 Female, age 42, unknown 76.0
2590 Female, age 75, unknown 74.1
1941 Male, age 53, unknown 71.0
Superior colliculus
nTPM: 91.9
2664 Male, age 75, both hemispheres 108.0
1995 Male, age 72, unknown 107.2
2668 Female, age 75, unknown 99.2
1913 Female, age 42, unknown 97.4
2261 Male, age 18, unknown 97.2
2087 Female, age 72, unknown 97.1
2587 Male, age 74, left hemisphere 83.4
1796 Male, age 53, unknown 82.7
1839 Male, age 51, unknown 80.2
1895 Male, age 76, right hemisphere 67.1
Ventral tegmental area
nTPM: 81.3
2021 Male, age 53, unknown 88.4
1942 Male, age 51, unknown 87.0
2223 Female, age 72, unknown 83.4
1915 Female, age 42, unknown 79.1
2218 Male, age 76, both hemispheres 75.8
2410 Female, age 72, unknown 74.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 43.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 43.4
Samples: 139

Max nTPM: 81.5
Min nTPM: 25.0
Std nTPM: 10.9
Median nTPM: 41.6
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 81.5
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 80.1
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 72.1
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 71.0
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 66.9
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 66.1
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 66.0
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 64.7
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 64.1
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 62.2
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 61.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 168.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 168.4
FF:10158-103A5 76 years, female 168.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 48.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 40.9
Samples: 4

Max nTPM: 46.1
Min nTPM: 35.7
Sample A Female 42.7
Sample B Female 39.2
Sample C Male 46.1
Sample D Male 35.7
Midbrain
nTPM: 48.3
Samples: 4

Max nTPM: 59.3
Min nTPM: 42.3
Sample A Female 42.3
Sample B Female 46.5
Sample C Male 59.3
Sample D Male 44.9
Periaqueductal gray
nTPM: 42.7
Samples: 3

Max nTPM: 43.1
Min nTPM: 42.1
Sample B Female 42.9
Sample C Male 42.1
Sample D Male 43.1
Superior colliculi
nTPM: 43.3
Samples: 4

Max nTPM: 50.7
Min nTPM: 37.2
Sample A Female 41.1
Sample B Female 37.2
Sample C Male 50.7
Sample D Male 44.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 68.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 68.9
Samples: 4

Max nTPM: 74.1
Min nTPM: 63.0
Sample A Male 63.0
Sample B Male 71.0
Sample C Female 74.1
Sample D Female 67.3

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