MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:2.0 nTPM
HPA Brain:9.6 nTPM
GTEx:2.0 nTPM
FANTOM5:20.1 Scaled Tags Per Million
Mouse:4.3 nTPM
Allen mouse:2.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 9.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 8.8
2411 Female, age 72, unknown 11.7
1870 Female, age 42, unknown 10.8
1830 Male, age 51, unknown 10.5
2019 Male, age 18, unknown 9.6
1833 Male, age 53, unknown 8.7
2666 Male, age 74, left hemisphere 8.5
2828 Female, age 72, unknown 8.1
1827 Male, age 72, unknown 8.0
2586 Male, age 75, left hemisphere 6.6
2219 Male, age 76, both hemispheres 5.8
Dorsal raphe nucleus
nTPM: 8.1
2750 Male, age 76, both hemispheres 10.8
2016 Female, age 72, unknown 8.6
1828 Male, age 53, unknown 7.3
2298 Female, age 72, unknown 7.2
2047 Male, age 72, unknown 6.3
Inferior colliculus
nTPM: 7.8
1848 Female, age 42, unknown 8.7
1890 Male, age 53, unknown 8.0
2097 Female, age 72, unknown 7.6
2849 Male, age 72, unknown 6.9
Median raphe nucleus
nTPM: 9.2
2220 Male, age 76, midline 9.2
Periaquaductal grey, anterior
nTPM: 9.2
2502 Female, age 75, unknown 10.2
1947 Male, age 18, unknown 9.5
1795 Male, age 51, unknown 8.0
Periaquaductal grey, dorsal
nTPM: 8.4
1831 Male, age 72, unknown 9.9
2850 Male, age 76, both hemispheres 8.0
1840 Male, age 53, unknown 7.9
2464 Female, age 72, unknown 7.8
Periaquaductal grey, lateral
nTPM: 9.6
2053 Male, age 18, unknown 10.6
2272 Male, age 74, both hemispheres 9.8
2140 Male, age 76, both hemispheres 8.5
Pretectal area
nTPM: 9.3
2007 Male, age 72, unknown 10.7
1815 Male, age 53, unknown 10.3
1817 Female, age 42, unknown 10.1
2316 Male, age 76, right hemisphere 9.6
2407 Male, age 75, both hemispheres 9.5
2273 Male, age 74, both hemispheres 9.3
2825 Male, age 18, unknown 9.3
1944 Female, age 72, unknown 9.1
1816 Male, age 51, unknown 8.9
2667 Female, age 75, unknown 8.3
2224 Female, age 72, unknown 7.7
Red nucleus
nTPM: 9.2
1821 Female, age 72, unknown 10.7
2584 Male, age 75, left hemisphere 10.7
2785 Male, age 18, unknown 10.2
1865 Male, age 51, unknown 9.9
2823 Male, age 76, right hemisphere 9.8
2227 Male, age 72, unknown 9.6
2769 Male, age 72, unknown 9.5
2725 Female, age 75, unknown 8.9
2503 Female, age 72, unknown 8.6
1954 Female, age 42, unknown 7.7
1904 Male, age 53, unknown 7.5
2588 Male, age 74, left hemisphere 6.8
Substantia nigra
nTPM: 7.3
1889 Female, age 72, unknown 9.1
1941 Male, age 53, unknown 9.1
2665 Male, age 74, both hemispheres 9.0
2583 Male, age 75, right hemisphere 8.5
2590 Female, age 75, unknown 8.3
1851 Male, age 51, unknown 6.9
2409 Female, age 72, unknown 6.7
2241 Male, age 72, unknown 6.2
2699 Male, age 18, unknown 5.6
1916 Female, age 42, unknown 4.1
Superior colliculus
nTPM: 9.4
1913 Female, age 42, unknown 13.2
1995 Male, age 72, unknown 10.7
2587 Male, age 74, left hemisphere 10.7
1839 Male, age 51, unknown 9.8
1895 Male, age 76, right hemisphere 8.9
2664 Male, age 75, both hemispheres 8.5
2087 Female, age 72, unknown 8.3
2261 Male, age 18, unknown 8.3
2668 Female, age 75, unknown 8.2
1796 Male, age 53, unknown 7.3
Ventral tegmental area
nTPM: 8.9
2223 Female, age 72, unknown 11.0
2021 Male, age 53, unknown 10.6
2218 Male, age 76, both hemispheres 8.6
2410 Female, age 72, unknown 8.2
1942 Male, age 51, unknown 7.9
1915 Female, age 42, unknown 6.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 2.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 2.0
Samples: 139

Max nTPM: 6.0
Min nTPM: 0.3
Std nTPM: 1.0
Median nTPM: 1.8
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 6.0
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 5.9
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 5.7
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 4.6
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 4.6
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 4.4
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 4.3
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 4.3
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 4.3
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 4.0
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 3.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 20.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 20.1
FF:10158-103A5 76 years, female 20.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 4.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 4.4
Samples: 4

Max nTPM: 4.5
Min nTPM: 4.1
Sample A Male 4.1
Sample B Male 4.4
Sample C Female 4.4
Sample D Female 4.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.7
70302204 Antisense, RP_050607_03_G11, Mouse strain C57BL/6J (56 days, male) 2.7

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