MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:8.4 nTPM
HPA Brain:18.1 nTPM
GTEx:8.4 nTPM
FANTOM5:38.9 Scaled Tags Per Million
Pig:18.4 nTPM
Mouse:27.0 nTPM
Allen mouse:1.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 18.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 13.3
2666 Male, age 74, left hemisphere 23.9
1827 Male, age 72, unknown 15.2
2219 Male, age 76, both hemispheres 14.1
2828 Female, age 72, unknown 14.1
2411 Female, age 72, unknown 13.0
1833 Male, age 53, unknown 11.8
2019 Male, age 18, unknown 11.4
1830 Male, age 51, unknown 10.2
2586 Male, age 75, left hemisphere 10.0
1870 Female, age 42, unknown 9.5
Dorsal raphe nucleus
nTPM: 13.1
2298 Female, age 72, unknown 17.3
2750 Male, age 76, both hemispheres 16.3
2047 Male, age 72, unknown 12.3
1828 Male, age 53, unknown 11.6
2016 Female, age 72, unknown 7.8
Inferior colliculus
nTPM: 13.8
2097 Female, age 72, unknown 15.9
2849 Male, age 72, unknown 15.8
1848 Female, age 42, unknown 12.3
1890 Male, age 53, unknown 11.0
Median raphe nucleus
nTPM: 18.1
2220 Male, age 76, midline 18.1
Periaquaductal grey, anterior
nTPM: 11.2
1795 Male, age 51, unknown 13.1
1947 Male, age 18, unknown 12.0
2502 Female, age 75, unknown 8.4
Periaquaductal grey, dorsal
nTPM: 11.2
1831 Male, age 72, unknown 13.7
2464 Female, age 72, unknown 12.7
1840 Male, age 53, unknown 9.8
2850 Male, age 76, both hemispheres 8.5
Periaquaductal grey, lateral
nTPM: 9.7
2053 Male, age 18, unknown 12.6
2272 Male, age 74, both hemispheres 9.2
2140 Male, age 76, both hemispheres 7.1
Pretectal area
nTPM: 16.1
1816 Male, age 51, unknown 26.3
1944 Female, age 72, unknown 22.0
1815 Male, age 53, unknown 21.6
2007 Male, age 72, unknown 21.1
1817 Female, age 42, unknown 20.9
2224 Female, age 72, unknown 13.9
2825 Male, age 18, unknown 13.7
2407 Male, age 75, both hemispheres 13.6
2316 Male, age 76, right hemisphere 11.0
2667 Female, age 75, unknown 7.7
2273 Male, age 74, both hemispheres 5.6
Red nucleus
nTPM: 12.1
2725 Female, age 75, unknown 21.7
2584 Male, age 75, left hemisphere 15.7
2823 Male, age 76, right hemisphere 14.6
2588 Male, age 74, left hemisphere 14.3
2785 Male, age 18, unknown 13.0
2503 Female, age 72, unknown 10.7
1954 Female, age 42, unknown 10.0
2227 Male, age 72, unknown 9.7
1821 Female, age 72, unknown 9.5
1865 Male, age 51, unknown 9.2
2769 Male, age 72, unknown 8.7
1904 Male, age 53, unknown 7.9
Substantia nigra
nTPM: 11.4
1889 Female, age 72, unknown 17.6
1941 Male, age 53, unknown 16.5
1916 Female, age 42, unknown 11.8
2409 Female, age 72, unknown 11.6
2583 Male, age 75, right hemisphere 11.3
2665 Male, age 74, both hemispheres 11.2
1851 Male, age 51, unknown 9.8
2590 Female, age 75, unknown 9.2
2241 Male, age 72, unknown 8.8
2699 Male, age 18, unknown 6.9
Superior colliculus
nTPM: 15.0
2668 Female, age 75, unknown 22.8
2261 Male, age 18, unknown 17.4
2087 Female, age 72, unknown 16.9
1796 Male, age 53, unknown 16.4
1895 Male, age 76, right hemisphere 16.0
1913 Female, age 42, unknown 13.1
1839 Male, age 51, unknown 13.0
1995 Male, age 72, unknown 12.0
2664 Male, age 75, both hemispheres 11.4
2587 Male, age 74, left hemisphere 10.8
Ventral tegmental area
nTPM: 11.0
2218 Male, age 76, both hemispheres 13.4
1915 Female, age 42, unknown 11.6
2021 Male, age 53, unknown 10.5
1942 Male, age 51, unknown 10.2
2410 Female, age 72, unknown 10.1
2223 Female, age 72, unknown 9.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 8.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 8.4
Samples: 139

Max nTPM: 50.4
Min nTPM: 0.8
Std nTPM: 5.9
Median nTPM: 7.4
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 50.4
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 30.0
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 25.7
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 21.9
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 19.1
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 17.2
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 17.1
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 16.8
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 16.1
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 15.8
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 15.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 38.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 38.9
FF:10158-103A5 76 years, female 38.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 18.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 10.1
Samples: 4

Max nTPM: 14.2
Min nTPM: 4.7
Sample A Female 14.2
Sample B Female 7.3
Sample C Male 14.1
Sample D Male 4.7
Midbrain
nTPM: 15.6
Samples: 4

Max nTPM: 22.2
Min nTPM: 7.3
Sample A Female 7.3
Sample B Female 11.0
Sample C Male 21.9
Sample D Male 22.2
Periaqueductal gray
nTPM: 13.4
Samples: 3

Max nTPM: 15.1
Min nTPM: 12.3
Sample B Female 12.3
Sample C Male 15.1
Sample D Male 12.7
Superior colliculi
nTPM: 18.5
Samples: 4

Max nTPM: 23.5
Min nTPM: 12.4
Sample A Female 18.2
Sample B Female 12.4
Sample C Male 19.7
Sample D Male 23.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 27.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 27.0
Samples: 4

Max nTPM: 28.1
Min nTPM: 25.9
Sample A Male 28.1
Sample B Male 25.9
Sample C Female 26.8
Sample D Female 27.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.7
71213204 Antisense, RP_050816_04_A07, Mouse strain C57BL/6J (56 days, male) 1.7

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