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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
108.5
nTPM
Monaco:
89.1
nTPM
Schmiedel:
57.7
TPM
T-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max nTPM
108.5
HPA sample
nTPM
gdT-cell nTPM: 87.6
Samples: 6
Max nTPM: 101.7
Min nTPM: 60.7
P10809_1007
60.7
P10809_1022
85.0
P10809_1041
85.1
P10809_1060
101.7
P10809_1077
93.9
P10809_1098
99.1
MAIT T-cell nTPM: 91.2
Samples: 6
Max nTPM: 113.0
Min nTPM: 55.2
P10809_1006
55.2
P10809_1024
106.8
P10809_1043
113.0
P10809_1062
93.9
P10809_1083
84.9
P10809_1097
93.5
Memory CD4 T-cell nTPM: 96.8
Samples: 6
Max nTPM: 121.2
Min nTPM: 73.9
P10809_1014
73.9
P10809_1026
121.2
P10809_1045
108.1
P10809_1064
94.1
P10809_1086
90.2
P10809_1113
93.2
Memory CD8 T-cell nTPM: 91.5
Samples: 5
Max nTPM: 107.0
Min nTPM: 66.2
P10809_1012
66.2
P10809_1027
95.7
P10809_1046
88.4
P10809_1065
100.4
P10809_1111
107.0
Naive CD4 T-cell nTPM: 103.2
Samples: 6
Max nTPM: 144.3
Min nTPM: 66.0
P10809_1015
66.0
P10809_1030
113.7
P10809_1049
144.3
P10809_1068
94.1
P10809_1085
96.6
P10809_1112
104.2
Naive CD8 T-cell nTPM: 91.6
Samples: 6
Max nTPM: 104.8
Min nTPM: 69.3
P10809_1016
69.3
P10809_1031
89.1
P10809_1050
104.8
P10809_1069
102.6
P10809_1087
94.5
P10809_1110
89.5
T-reg nTPM: 108.5
Samples: 6
Max nTPM: 142.7
Min nTPM: 71.8
P10809_1018
71.8
P10809_1037
79.4
P10809_1056
142.7
P10809_1075
131.8
P10809_1094
102.4
P10809_1106
122.8
T-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max nTPM
89.1
Monaco sample
nTPM
Central memory CD8 T-cell nTPM: 60.0
Samples: 4
Max nTPM: 88.1
Min nTPM: 33.3
RHH5202_R3573
69.3
RHH5230_R3602
33.3
RHH5259_R3631
49.2
RHH5288_R3660
88.1
Effector memory CD8 T-cell nTPM: 82.1
Samples: 4
Max nTPM: 97.7
Min nTPM: 69.5
RHH5203_R3574
97.7
RHH5231_R3603
73.6
RHH5260_R3632
69.5
RHH5289_R3661
87.5
MAIT T-cell nTPM: 68.5
Samples: 4
Max nTPM: 83.7
Min nTPM: 47.2
RHH5233_R3605
73.2
RHH5205_R3576
47.2
RHH5262_R3634
69.8
RHH5297_R3663
83.7
Memory CD4 T-cell TFH nTPM: 86.2
Samples: 4
Max nTPM: 100.1
Min nTPM: 73.9
RHH5300_R3666
80.2
RHH5236_R3608
100.1
RHH5265_R3637
73.9
RHH5208_R3579
90.7
Memory CD4 T-cell Th1 nTPM: 74.0
Samples: 4
Max nTPM: 94.1
Min nTPM: 43.9
RHH5210_R3581
94.1
RHH5302_R3668
89.4
RHH5238_R3610
43.9
RHH5267_R3639
68.4
Memory CD4 T-cell Th1/Th17 nTPM: 65.9
Samples: 4
Max nTPM: 87.6
Min nTPM: 30.7
RHH5303_R3669
87.0
RHH5211_R3582
87.6
RHH5239_R3611
30.7
RHH5268_R3640
58.4
Memory CD4 T-cell Th17 nTPM: 57.5
Samples: 4
Max nTPM: 86.5
Min nTPM: 38.9
RHH5304_R3670
55.3
RHH5212_R3583
86.5
RHH5240_R3612
49.1
RHH5269_R3641
38.9
Memory CD4 T-cell Th2 nTPM: 70.4
Samples: 4
Max nTPM: 86.2
Min nTPM: 50.8
RHH5305_R3671
70.4
RHH5213_R3584
74.1
RHH5241_R3613
86.2
RHH5270_R3642
50.8
Naive CD4 T-cell nTPM: 67.8
Samples: 4
Max nTPM: 98.1
Min nTPM: 49.4
RHH5306_R3672
72.7
RHH5214_R3585
98.1
RHH5242_R3614
51.1
RHH5271_R3643
49.4
Naive CD8 T-cell nTPM: 68.4
Samples: 4
Max nTPM: 84.4
Min nTPM: 56.6
RHH5201_R3572
71.9
RHH5229_R3601
60.8
RHH5258_R3630
84.4
RHH5287_R3659
56.6
Non-Vd2 gdTCR nTPM: 77.4
Samples: 4
Max nTPM: 105.6
Min nTPM: 31.6
RHH5235_R3607
31.6
RHH5264_R3636
105.6
RHH5207_R3578
85.2
RHH5299_R3665
87.0
T-reg nTPM: 89.2
Samples: 4
Max nTPM: 121.3
Min nTPM: 50.0
RHH5301_R3667
121.3
RHH5237_R3609
106.2
RHH5266_R3638
50.0
RHH5209_R3580
79.1
Terminal effector memory CD4 T-cell nTPM: 71.6
Samples: 2
Max nTPM: 91.5
Min nTPM: 51.6
RHH5243_R3615
51.6
RHH5272_R3644
91.5
Terminal effector memory CD8 T-cell nTPM: 83.9
Samples: 4
Max nTPM: 107.3
Min nTPM: 58.9
RHH5232_R3604
66.7
RHH5204_R3575
107.3
RHH5261_R3633
58.9
RHH5296_R3662
102.8
Vd2 gdTCR nTPM: 82.6
Samples: 4
Max nTPM: 106.9
Min nTPM: 53.3
RHH5234_R3606
53.3
RHH5206_R3577
106.9
RHH5263_R3635
64.4
RHH5298_R3664
105.9
T-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
The Human Protein Atlas project is funded
