MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:118.7 nTPM
HPA Brain:190.0 nTPM
GTEx:118.7 nTPM
FANTOM5:170.7 Scaled Tags Per Million
Pig:356.2 nTPM
Mouse:417.2 nTPM
Allen mouse:7.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 190.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 148.6
1827 Male, age 72, unknown 190.5
2411 Female, age 72, unknown 185.9
2219 Male, age 76, both hemispheres 157.7
2019 Male, age 18, unknown 153.1
1870 Female, age 42, unknown 148.3
2666 Male, age 74, left hemisphere 143.4
2828 Female, age 72, unknown 137.3
1833 Male, age 53, unknown 137.2
1830 Male, age 51, unknown 131.0
2586 Male, age 75, left hemisphere 102.1
Dorsal raphe nucleus
nTPM: 153.7
2298 Female, age 72, unknown 202.5
2750 Male, age 76, both hemispheres 169.0
2047 Male, age 72, unknown 143.8
1828 Male, age 53, unknown 137.8
2016 Female, age 72, unknown 115.5
Inferior colliculus
nTPM: 148.3
2097 Female, age 72, unknown 195.9
1848 Female, age 42, unknown 142.0
1890 Male, age 53, unknown 129.7
2849 Male, age 72, unknown 125.6
Median raphe nucleus
nTPM: 190.0
2220 Male, age 76, midline 190.0
Periaquaductal grey, anterior
nTPM: 181.4
1947 Male, age 18, unknown 191.0
2502 Female, age 75, unknown 176.8
1795 Male, age 51, unknown 176.4
Periaquaductal grey, dorsal
nTPM: 142.7
1840 Male, age 53, unknown 148.6
2464 Female, age 72, unknown 148.2
1831 Male, age 72, unknown 146.6
2850 Male, age 76, both hemispheres 127.3
Periaquaductal grey, lateral
nTPM: 145.5
2272 Male, age 74, both hemispheres 169.1
2053 Male, age 18, unknown 151.9
2140 Male, age 76, both hemispheres 115.5
Pretectal area
nTPM: 187.5
1816 Male, age 51, unknown 267.1
1944 Female, age 72, unknown 240.5
1817 Female, age 42, unknown 223.3
2007 Male, age 72, unknown 213.9
1815 Male, age 53, unknown 211.0
2224 Female, age 72, unknown 183.4
2273 Male, age 74, both hemispheres 167.3
2667 Female, age 75, unknown 151.5
2825 Male, age 18, unknown 142.6
2407 Male, age 75, both hemispheres 132.3
2316 Male, age 76, right hemisphere 129.1
Red nucleus
nTPM: 126.7
1821 Female, age 72, unknown 161.0
2725 Female, age 75, unknown 152.8
2785 Male, age 18, unknown 139.5
1954 Female, age 42, unknown 131.3
2503 Female, age 72, unknown 130.6
1904 Male, age 53, unknown 122.9
2584 Male, age 75, left hemisphere 118.0
2227 Male, age 72, unknown 114.5
2588 Male, age 74, left hemisphere 114.5
1865 Male, age 51, unknown 112.4
2823 Male, age 76, right hemisphere 112.0
2769 Male, age 72, unknown 110.3
Substantia nigra
nTPM: 163.4
1916 Female, age 42, unknown 197.6
1941 Male, age 53, unknown 196.2
1889 Female, age 72, unknown 192.9
2241 Male, age 72, unknown 172.1
1851 Male, age 51, unknown 167.0
2409 Female, age 72, unknown 159.4
2590 Female, age 75, unknown 150.1
2665 Male, age 74, both hemispheres 147.0
2583 Male, age 75, right hemisphere 126.6
2699 Male, age 18, unknown 124.6
Superior colliculus
nTPM: 160.7
2261 Male, age 18, unknown 203.1
2087 Female, age 72, unknown 199.2
1796 Male, age 53, unknown 173.0
2668 Female, age 75, unknown 173.0
2587 Male, age 74, left hemisphere 154.5
1895 Male, age 76, right hemisphere 154.2
1913 Female, age 42, unknown 151.0
1995 Male, age 72, unknown 144.2
1839 Male, age 51, unknown 143.7
2664 Male, age 75, both hemispheres 111.5
Ventral tegmental area
nTPM: 164.6
2218 Male, age 76, both hemispheres 192.5
2410 Female, age 72, unknown 188.7
1915 Female, age 42, unknown 166.7
1942 Male, age 51, unknown 152.7
2223 Female, age 72, unknown 150.2
2021 Male, age 53, unknown 137.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 118.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 118.7
Samples: 139

Max nTPM: 305.4
Min nTPM: 60.6
Std nTPM: 37.7
Median nTPM: 108.0
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 305.4
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 266.4
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 211.3
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 206.7
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 198.8
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 190.3
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 189.9
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 188.9
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 186.5
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 185.8
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 185.2
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 170.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 170.7
FF:10158-103A5 76 years, female 170.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 356.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 309.7
Samples: 4

Max nTPM: 405.6
Min nTPM: 194.4
Sample A Female 405.6
Sample B Female 249.8
Sample C Male 389.0
Sample D Male 194.4
Midbrain
nTPM: 356.3
Samples: 4

Max nTPM: 502.7
Min nTPM: 267.2
Sample A Female 293.8
Sample B Female 267.2
Sample C Male 502.7
Sample D Male 361.3
Periaqueductal gray
nTPM: 259.0
Samples: 3

Max nTPM: 306.5
Min nTPM: 232.7
Sample B Female 237.7
Sample C Male 306.5
Sample D Male 232.7
Superior colliculi
nTPM: 350.5
Samples: 4

Max nTPM: 423.2
Min nTPM: 260.6
Sample A Female 371.1
Sample B Female 260.6
Sample C Male 423.2
Sample D Male 347.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 417.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 417.2
Samples: 4

Max nTPM: 430.0
Min nTPM: 405.2
Sample A Male 405.2
Sample B Male 420.5
Sample C Female 430.0
Sample D Female 413.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 7.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 7.8
70919836 Antisense, RP_050713_02_B06, Mouse strain C57BL/6J (56 days, male) 8.4
2738 Antisense, RP_Baylor_103195, Mouse strain C57BL/6J (56 days, male) 7.2
2737 Antisense, RP_Baylor_103195, Mouse strain C57BL/6J (56 days, male) 6.7

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org