MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:846.0 nTPM
HPA Brain:785.1 nTPM
GTEx:846.0 nTPM
FANTOM5:859.0 Scaled Tags Per Million
Pig:191.4 nTPM
Mouse:133.4 nTPM
Allen mouse:3.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 785.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 626.9
2586 Male, age 75, left hemisphere 931.9
2828 Female, age 72, unknown 837.5
1833 Male, age 53, unknown 658.5
1870 Female, age 42, unknown 658.2
1830 Male, age 51, unknown 634.4
2411 Female, age 72, unknown 615.3
2019 Male, age 18, unknown 540.5
1827 Male, age 72, unknown 530.0
2666 Male, age 74, left hemisphere 491.0
2219 Male, age 76, both hemispheres 371.6
Dorsal raphe nucleus
nTPM: 547.2
2750 Male, age 76, both hemispheres 605.1
2016 Female, age 72, unknown 603.4
1828 Male, age 53, unknown 567.1
2047 Male, age 72, unknown 486.3
2298 Female, age 72, unknown 474.1
Inferior colliculus
nTPM: 503.8
1848 Female, age 42, unknown 542.3
2849 Male, age 72, unknown 520.3
1890 Male, age 53, unknown 519.4
2097 Female, age 72, unknown 433.1
Median raphe nucleus
nTPM: 393.2
2220 Male, age 76, midline 393.2
Periaquaductal grey, anterior
nTPM: 485.9
2502 Female, age 75, unknown 507.4
1947 Male, age 18, unknown 481.4
1795 Male, age 51, unknown 468.8
Periaquaductal grey, dorsal
nTPM: 479.8
2464 Female, age 72, unknown 540.1
2850 Male, age 76, both hemispheres 488.0
1831 Male, age 72, unknown 448.8
1840 Male, age 53, unknown 442.3
Periaquaductal grey, lateral
nTPM: 492.6
2053 Male, age 18, unknown 551.6
2140 Male, age 76, both hemispheres 505.2
2272 Male, age 74, both hemispheres 420.9
Pretectal area
nTPM: 484.0
1815 Male, age 53, unknown 554.0
2316 Male, age 76, right hemisphere 553.0
2825 Male, age 18, unknown 548.1
2667 Female, age 75, unknown 537.5
1817 Female, age 42, unknown 522.1
2407 Male, age 75, both hemispheres 497.4
2273 Male, age 74, both hemispheres 436.4
1944 Female, age 72, unknown 435.7
2224 Female, age 72, unknown 429.4
2007 Male, age 72, unknown 418.4
1816 Male, age 51, unknown 392.0
Red nucleus
nTPM: 785.1
2769 Male, age 72, unknown 962.4
2823 Male, age 76, right hemisphere 896.3
2227 Male, age 72, unknown 868.1
1865 Male, age 51, unknown 860.7
1904 Male, age 53, unknown 833.8
1954 Female, age 42, unknown 818.9
2503 Female, age 72, unknown 800.0
1821 Female, age 72, unknown 796.9
2588 Male, age 74, left hemisphere 714.4
2725 Female, age 75, unknown 689.0
2785 Male, age 18, unknown 660.1
2584 Male, age 75, left hemisphere 521.2
Substantia nigra
nTPM: 546.0
2699 Male, age 18, unknown 687.6
2583 Male, age 75, right hemisphere 657.1
1851 Male, age 51, unknown 619.5
1916 Female, age 42, unknown 567.6
2409 Female, age 72, unknown 530.1
2665 Male, age 74, both hemispheres 526.2
2590 Female, age 75, unknown 509.6
1889 Female, age 72, unknown 505.4
2241 Male, age 72, unknown 438.6
1941 Male, age 53, unknown 418.0
Superior colliculus
nTPM: 570.8
1995 Male, age 72, unknown 757.9
1913 Female, age 42, unknown 674.0
2664 Male, age 75, both hemispheres 595.3
2668 Female, age 75, unknown 575.7
1796 Male, age 53, unknown 569.9
1839 Male, age 51, unknown 550.6
1895 Male, age 76, right hemisphere 542.8
2587 Male, age 74, left hemisphere 520.7
2087 Female, age 72, unknown 461.6
2261 Male, age 18, unknown 459.7
Ventral tegmental area
nTPM: 542.9
2223 Female, age 72, unknown 589.6
1915 Female, age 42, unknown 575.4
2410 Female, age 72, unknown 569.2
1942 Male, age 51, unknown 530.1
2021 Male, age 53, unknown 517.1
2218 Male, age 76, both hemispheres 475.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 846.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 846.0
Samples: 139

Max nTPM: 2158.9
Min nTPM: 189.1
Std nTPM: 339.9
Median nTPM: 787.0
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 2158.9
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 1954.8
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 1578.7
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 1513.3
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 1498.1
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 1497.9
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 1452.4
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 1444.9
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 1407.3
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 1398.3
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 1378.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 859.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 859.0
FF:10158-103A5 76 years, female 859.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 191.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 186.7
Samples: 4

Max nTPM: 240.4
Min nTPM: 147.2
Sample A Female 202.2
Sample B Female 147.2
Sample C Male 157.1
Sample D Male 240.4
Midbrain
nTPM: 191.4
Samples: 4

Max nTPM: 333.2
Min nTPM: 119.7
Sample A Female 333.2
Sample B Female 192.7
Sample C Male 119.7
Sample D Male 119.8
Periaqueductal gray
nTPM: 142.9
Samples: 3

Max nTPM: 162.3
Min nTPM: 132.7
Sample B Female 162.3
Sample C Male 132.7
Sample D Male 133.6
Superior colliculi
nTPM: 157.2
Samples: 4

Max nTPM: 202.4
Min nTPM: 102.3
Sample A Female 202.4
Sample B Female 102.3
Sample C Male 148.9
Sample D Male 175.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 133.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 133.4
Samples: 4

Max nTPM: 157.6
Min nTPM: 111.5
Sample A Male 157.6
Sample B Male 116.6
Sample C Female 111.5
Sample D Female 147.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.1
1465 Antisense, RP_040420_01_D05, Mouse strain C57BL/6J (56 days, male) 6.1
1464 Antisense, RP_040420_01_D05, Mouse strain C57BL/6J (56 days, male) 2.1
74581363 Antisense, RP_060215_03_B02, Mouse strain C57BL/6J (56 days, male) 0.1

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