MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:25.1 nTPM
HPA Brain:54.7 nTPM
GTEx:25.1 nTPM
FANTOM5:101.2 Scaled Tags Per Million
Pig:63.7 nTPM
Mouse:29.0 nTPM
Allen mouse:0.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 54.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 47.1
2411 Female, age 72, unknown 58.0
1827 Male, age 72, unknown 54.5
1870 Female, age 42, unknown 53.4
2586 Male, age 75, left hemisphere 49.0
2828 Female, age 72, unknown 45.0
1833 Male, age 53, unknown 44.5
1830 Male, age 51, unknown 43.0
2219 Male, age 76, both hemispheres 42.6
2019 Male, age 18, unknown 42.5
2666 Male, age 74, left hemisphere 38.7
Dorsal raphe nucleus
nTPM: 53.7
2298 Female, age 72, unknown 64.2
2047 Male, age 72, unknown 56.1
1828 Male, age 53, unknown 51.7
2750 Male, age 76, both hemispheres 49.5
2016 Female, age 72, unknown 47.1
Inferior colliculus
nTPM: 47.6
2097 Female, age 72, unknown 52.8
1848 Female, age 42, unknown 49.8
1890 Male, age 53, unknown 45.5
2849 Male, age 72, unknown 42.3
Median raphe nucleus
nTPM: 54.7
2220 Male, age 76, midline 54.7
Periaquaductal grey, anterior
nTPM: 54.7
1947 Male, age 18, unknown 61.6
1795 Male, age 51, unknown 51.6
2502 Female, age 75, unknown 50.8
Periaquaductal grey, dorsal
nTPM: 47.2
1840 Male, age 53, unknown 49.7
2850 Male, age 76, both hemispheres 47.4
1831 Male, age 72, unknown 47.2
2464 Female, age 72, unknown 44.5
Periaquaductal grey, lateral
nTPM: 48.0
2053 Male, age 18, unknown 51.1
2272 Male, age 74, both hemispheres 51.1
2140 Male, age 76, both hemispheres 41.8
Pretectal area
nTPM: 51.9
1816 Male, age 51, unknown 59.1
2273 Male, age 74, both hemispheres 58.5
2224 Female, age 72, unknown 58.3
1815 Male, age 53, unknown 54.5
2667 Female, age 75, unknown 52.1
2007 Male, age 72, unknown 51.2
1944 Female, age 72, unknown 50.5
1817 Female, age 42, unknown 50.0
2825 Male, age 18, unknown 50.0
2407 Male, age 75, both hemispheres 45.0
2316 Male, age 76, right hemisphere 42.1
Red nucleus
nTPM: 42.9
1821 Female, age 72, unknown 56.2
2725 Female, age 75, unknown 45.4
1954 Female, age 42, unknown 45.2
2503 Female, age 72, unknown 43.8
2823 Male, age 76, right hemisphere 43.3
1904 Male, age 53, unknown 41.3
2227 Male, age 72, unknown 41.0
1865 Male, age 51, unknown 40.9
2769 Male, age 72, unknown 40.9
2588 Male, age 74, left hemisphere 39.8
2785 Male, age 18, unknown 38.8
2584 Male, age 75, left hemisphere 38.7
Substantia nigra
nTPM: 47.9
1889 Female, age 72, unknown 59.4
2241 Male, age 72, unknown 54.6
1941 Male, age 53, unknown 54.3
1916 Female, age 42, unknown 53.4
1851 Male, age 51, unknown 50.8
2590 Female, age 75, unknown 43.0
2665 Male, age 74, both hemispheres 42.4
2699 Male, age 18, unknown 41.9
2583 Male, age 75, right hemisphere 40.7
2409 Female, age 72, unknown 39.1
Superior colliculus
nTPM: 46.3
2261 Male, age 18, unknown 54.1
2668 Female, age 75, unknown 51.0
2087 Female, age 72, unknown 49.1
1796 Male, age 53, unknown 48.0
2587 Male, age 74, left hemisphere 47.5
1895 Male, age 76, right hemisphere 45.4
1839 Male, age 51, unknown 43.8
2664 Male, age 75, both hemispheres 43.3
1913 Female, age 42, unknown 40.6
1995 Male, age 72, unknown 40.3
Ventral tegmental area
nTPM: 47.6
2410 Female, age 72, unknown 52.2
1942 Male, age 51, unknown 49.0
2218 Male, age 76, both hemispheres 48.7
1915 Female, age 42, unknown 48.4
2223 Female, age 72, unknown 45.4
2021 Male, age 53, unknown 42.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 25.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 25.1
Samples: 139

Max nTPM: 49.1
Min nTPM: 14.4
Std nTPM: 5.5
Median nTPM: 24.4
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 49.1
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 43.4
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 43.2
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 42.4
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 41.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 38.5
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 34.6
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 34.6
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 34.1
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 32.9
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 32.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 101.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 101.2
FF:10158-103A5 76 years, female 101.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 63.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 59.7
Samples: 4

Max nTPM: 66.0
Min nTPM: 54.6
Sample A Female 66.0
Sample B Female 58.2
Sample C Male 60.1
Sample D Male 54.6
Midbrain
nTPM: 63.7
Samples: 4

Max nTPM: 72.6
Min nTPM: 57.5
Sample A Female 72.6
Sample B Female 67.1
Sample C Male 57.5
Sample D Male 57.5
Periaqueductal gray
nTPM: 58.6
Samples: 3

Max nTPM: 62.1
Min nTPM: 54.4
Sample B Female 62.1
Sample C Male 59.3
Sample D Male 54.4
Superior colliculi
nTPM: 55.3
Samples: 4

Max nTPM: 58.0
Min nTPM: 52.2
Sample A Female 58.0
Sample B Female 52.2
Sample C Male 55.7
Sample D Male 55.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 29.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 29.0
Samples: 4

Max nTPM: 32.6
Min nTPM: 27.8
Sample A Male 27.9
Sample B Male 27.8
Sample C Female 32.6
Sample D Female 27.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.6
2116 Antisense, RP_Baylor_103267, Mouse strain C57BL/6J (56 days, male) 0.6
2115 Antisense, RP_Baylor_103267, Mouse strain C57BL/6J (56 days, male) 0.2

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