MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:12.7 nTPM
HPA Brain:28.0 nTPM
GTEx:12.7 nTPM
FANTOM5:15.4 Scaled Tags Per Million
Pig:14.0 nTPM
Mouse:25.2 nTPM
Allen mouse:3.1 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 28.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 24.5
2586 Male, age 75, left hemisphere 43.9
2219 Male, age 76, both hemispheres 34.0
2666 Male, age 74, left hemisphere 28.2
2828 Female, age 72, unknown 24.7
1830 Male, age 51, unknown 22.0
1827 Male, age 72, unknown 21.8
1833 Male, age 53, unknown 21.7
2411 Female, age 72, unknown 18.6
1870 Female, age 42, unknown 17.7
2019 Male, age 18, unknown 11.8
Dorsal raphe nucleus
nTPM: 26.2
2047 Male, age 72, unknown 34.9
1828 Male, age 53, unknown 31.6
2298 Female, age 72, unknown 23.7
2016 Female, age 72, unknown 22.4
2750 Male, age 76, both hemispheres 18.5
Inferior colliculus
nTPM: 28.0
1848 Female, age 42, unknown 30.6
2849 Male, age 72, unknown 29.9
1890 Male, age 53, unknown 27.2
2097 Female, age 72, unknown 24.2
Median raphe nucleus
nTPM: 26.7
2220 Male, age 76, midline 26.7
Periaquaductal grey, anterior
nTPM: 26.3
1947 Male, age 18, unknown 33.0
2502 Female, age 75, unknown 23.5
1795 Male, age 51, unknown 22.3
Periaquaductal grey, dorsal
nTPM: 26.8
1831 Male, age 72, unknown 35.1
1840 Male, age 53, unknown 24.6
2464 Female, age 72, unknown 24.4
2850 Male, age 76, both hemispheres 23.1
Periaquaductal grey, lateral
nTPM: 18.7
2053 Male, age 18, unknown 22.0
2140 Male, age 76, both hemispheres 20.5
2272 Male, age 74, both hemispheres 13.5
Pretectal area
nTPM: 21.2
2825 Male, age 18, unknown 30.4
2407 Male, age 75, both hemispheres 27.1
2224 Female, age 72, unknown 23.3
2007 Male, age 72, unknown 22.5
1816 Male, age 51, unknown 22.3
2316 Male, age 76, right hemisphere 22.0
1815 Male, age 53, unknown 19.5
1817 Female, age 42, unknown 18.9
2667 Female, age 75, unknown 18.3
1944 Female, age 72, unknown 15.5
2273 Male, age 74, both hemispheres 13.6
Red nucleus
nTPM: 19.3
2584 Male, age 75, left hemisphere 32.9
2769 Male, age 72, unknown 22.9
2503 Female, age 72, unknown 20.5
2588 Male, age 74, left hemisphere 20.5
2227 Male, age 72, unknown 19.6
1954 Female, age 42, unknown 18.9
2725 Female, age 75, unknown 18.1
1821 Female, age 72, unknown 17.8
2823 Male, age 76, right hemisphere 17.5
2785 Male, age 18, unknown 14.8
1904 Male, age 53, unknown 14.3
1865 Male, age 51, unknown 13.7
Substantia nigra
nTPM: 24.0
1916 Female, age 42, unknown 36.5
2665 Male, age 74, both hemispheres 31.2
1941 Male, age 53, unknown 27.2
2699 Male, age 18, unknown 26.8
2583 Male, age 75, right hemisphere 26.0
2590 Female, age 75, unknown 22.6
1851 Male, age 51, unknown 22.2
1889 Female, age 72, unknown 18.6
2409 Female, age 72, unknown 15.5
2241 Male, age 72, unknown 13.3
Superior colliculus
nTPM: 22.7
2664 Male, age 75, both hemispheres 41.1
1839 Male, age 51, unknown 29.6
2668 Female, age 75, unknown 28.4
1796 Male, age 53, unknown 22.5
2087 Female, age 72, unknown 20.9
2261 Male, age 18, unknown 20.1
1895 Male, age 76, right hemisphere 18.7
2587 Male, age 74, left hemisphere 17.3
1995 Male, age 72, unknown 14.4
1913 Female, age 42, unknown 13.7
Ventral tegmental area
nTPM: 23.9
1942 Male, age 51, unknown 27.8
1915 Female, age 42, unknown 26.9
2021 Male, age 53, unknown 25.2
2218 Male, age 76, both hemispheres 23.3
2223 Female, age 72, unknown 21.7
2410 Female, age 72, unknown 18.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 12.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 12.7
Samples: 139

Max nTPM: 27.3
Min nTPM: 0.7
Std nTPM: 5.5
Median nTPM: 12.5
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 27.3
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 26.8
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 26.0
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 25.0
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 24.7
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 24.3
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 24.3
GTEX-T6MN-0011-R2A-SM-32QOW 50-59 years, male 23.6
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 23.4
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 22.9
GTEX-13RTJ-0011-R2a-SM-5PNW9 60-69 years, male 21.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 15.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 15.4
FF:10158-103A5 76 years, female 15.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 14.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 11.4
Samples: 4

Max nTPM: 15.4
Min nTPM: 7.8
Sample A Female 13.6
Sample B Female 8.9
Sample C Male 15.4
Sample D Male 7.8
Midbrain
nTPM: 12.1
Samples: 4

Max nTPM: 16.1
Min nTPM: 9.2
Sample A Female 9.2
Sample B Female 13.8
Sample C Male 9.4
Sample D Male 16.1
Periaqueductal gray
nTPM: 14.0
Samples: 3

Max nTPM: 16.3
Min nTPM: 12.0
Sample B Female 13.8
Sample C Male 16.3
Sample D Male 12.0
Superior colliculi
nTPM: 10.5
Samples: 4

Max nTPM: 15.2
Min nTPM: 6.5
Sample A Female 12.4
Sample B Female 7.8
Sample C Male 6.5
Sample D Male 15.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 25.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 25.2
Samples: 4

Max nTPM: 28.2
Min nTPM: 21.7
Sample A Male 28.2
Sample B Male 25.8
Sample C Female 21.7
Sample D Female 25.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.1
73930839 Antisense, RP_051214_04_D01, Mouse strain C57BL/6J (56 days, male) 4.8
70430892 Antisense, RP_050614_02_C08, Mouse strain C57BL/6J (56 days, male) 1.4

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