MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:89.0 nTPM
HPA Brain:35.2 nTPM
GTEx:89.0 nTPM
FANTOM5:71.0 Scaled Tags Per Million
Mouse:43.5 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 35.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 25.2
2666 Male, age 74, left hemisphere 37.6
1870 Female, age 42, unknown 32.1
1827 Male, age 72, unknown 28.3
2828 Female, age 72, unknown 26.5
1830 Male, age 51, unknown 25.1
2586 Male, age 75, left hemisphere 24.9
2019 Male, age 18, unknown 24.8
1833 Male, age 53, unknown 21.0
2411 Female, age 72, unknown 19.9
2219 Male, age 76, both hemispheres 11.8
Dorsal raphe nucleus
nTPM: 25.7
2016 Female, age 72, unknown 29.0
2750 Male, age 76, both hemispheres 27.4
2047 Male, age 72, unknown 26.3
1828 Male, age 53, unknown 25.7
2298 Female, age 72, unknown 20.2
Inferior colliculus
nTPM: 27.1
1890 Male, age 53, unknown 31.9
2849 Male, age 72, unknown 28.9
1848 Female, age 42, unknown 26.2
2097 Female, age 72, unknown 21.3
Median raphe nucleus
nTPM: 35.2
2220 Male, age 76, midline 35.2
Periaquaductal grey, anterior
nTPM: 22.5
2502 Female, age 75, unknown 27.0
1947 Male, age 18, unknown 21.2
1795 Male, age 51, unknown 19.3
Periaquaductal grey, dorsal
nTPM: 24.7
2850 Male, age 76, both hemispheres 36.4
1831 Male, age 72, unknown 23.2
1840 Male, age 53, unknown 22.6
2464 Female, age 72, unknown 16.6
Periaquaductal grey, lateral
nTPM: 24.8
2140 Male, age 76, both hemispheres 32.5
2053 Male, age 18, unknown 23.5
2272 Male, age 74, both hemispheres 18.5
Pretectal area
nTPM: 24.8
1817 Female, age 42, unknown 39.6
2007 Male, age 72, unknown 32.5
1815 Male, age 53, unknown 29.3
2316 Male, age 76, right hemisphere 28.6
1816 Male, age 51, unknown 26.8
1944 Female, age 72, unknown 25.6
2825 Male, age 18, unknown 25.0
2667 Female, age 75, unknown 19.3
2407 Male, age 75, both hemispheres 16.9
2224 Female, age 72, unknown 15.7
2273 Male, age 74, both hemispheres 13.3
Red nucleus
nTPM: 32.4
1821 Female, age 72, unknown 44.5
2588 Male, age 74, left hemisphere 35.6
2503 Female, age 72, unknown 34.8
1865 Male, age 51, unknown 34.6
1954 Female, age 42, unknown 33.9
2725 Female, age 75, unknown 33.1
2823 Male, age 76, right hemisphere 31.9
2227 Male, age 72, unknown 31.2
2785 Male, age 18, unknown 28.0
2769 Male, age 72, unknown 27.3
2584 Male, age 75, left hemisphere 26.9
1904 Male, age 53, unknown 26.4
Substantia nigra
nTPM: 21.9
2665 Male, age 74, both hemispheres 34.5
1889 Female, age 72, unknown 31.6
2699 Male, age 18, unknown 22.8
2590 Female, age 75, unknown 21.1
1851 Male, age 51, unknown 20.6
1916 Female, age 42, unknown 20.3
2583 Male, age 75, right hemisphere 19.5
2409 Female, age 72, unknown 18.0
1941 Male, age 53, unknown 17.3
2241 Male, age 72, unknown 13.6
Superior colliculus
nTPM: 25.5
2587 Male, age 74, left hemisphere 32.3
1913 Female, age 42, unknown 28.3
2261 Male, age 18, unknown 26.9
1995 Male, age 72, unknown 26.8
1796 Male, age 53, unknown 26.4
1839 Male, age 51, unknown 26.1
2668 Female, age 75, unknown 24.7
1895 Male, age 76, right hemisphere 24.0
2087 Female, age 72, unknown 23.5
2664 Male, age 75, both hemispheres 15.8
Ventral tegmental area
nTPM: 24.0
2223 Female, age 72, unknown 28.6
2218 Male, age 76, both hemispheres 28.4
2021 Male, age 53, unknown 27.1
1915 Female, age 42, unknown 23.1
1942 Male, age 51, unknown 21.2
2410 Female, age 72, unknown 15.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 89.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 89.0
Samples: 139

Max nTPM: 238.6
Min nTPM: 35.0
Std nTPM: 36.2
Median nTPM: 78.5
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 238.6
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 207.7
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 188.3
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 178.6
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 177.5
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 165.2
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 161.9
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 159.7
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 157.3
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 156.5
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 151.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 71.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 71.0
FF:10158-103A5 76 years, female 71.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 43.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 43.5
Samples: 4

Max nTPM: 45.6
Min nTPM: 40.4
Sample A Male 42.9
Sample B Male 45.6
Sample C Female 40.4
Sample D Female 45.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
69817037 Antisense, RP_050510_02_E01, Mouse strain C57BL/6J (56 days, male) 0.1

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