MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:6.0 nTPM
HPA Brain:23.1 nTPM
GTEx:6.0 nTPM
FANTOM5:9.8 Scaled Tags Per Million
Pig:6.2 nTPM
Mouse:15.8 nTPM
Allen mouse:0.8 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 23.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 21.6
2586 Male, age 75, left hemisphere 31.3
2828 Female, age 72, unknown 23.5
1827 Male, age 72, unknown 22.3
1833 Male, age 53, unknown 21.8
1830 Male, age 51, unknown 21.2
2019 Male, age 18, unknown 21.0
1870 Female, age 42, unknown 20.3
2411 Female, age 72, unknown 18.8
2219 Male, age 76, both hemispheres 17.8
2666 Male, age 74, left hemisphere 17.8
Dorsal raphe nucleus
nTPM: 22.5
2016 Female, age 72, unknown 25.2
2298 Female, age 72, unknown 24.7
2047 Male, age 72, unknown 22.5
1828 Male, age 53, unknown 21.5
2750 Male, age 76, both hemispheres 18.6
Inferior colliculus
nTPM: 23.0
1848 Female, age 42, unknown 25.0
2849 Male, age 72, unknown 23.8
1890 Male, age 53, unknown 22.7
2097 Female, age 72, unknown 20.4
Median raphe nucleus
nTPM: 17.2
2220 Male, age 76, midline 17.2
Periaquaductal grey, anterior
nTPM: 23.1
2502 Female, age 75, unknown 26.2
1947 Male, age 18, unknown 22.0
1795 Male, age 51, unknown 21.2
Periaquaductal grey, dorsal
nTPM: 22.8
1840 Male, age 53, unknown 25.6
2850 Male, age 76, both hemispheres 24.5
1831 Male, age 72, unknown 21.3
2464 Female, age 72, unknown 19.9
Periaquaductal grey, lateral
nTPM: 22.9
2140 Male, age 76, both hemispheres 25.8
2053 Male, age 18, unknown 22.3
2272 Male, age 74, both hemispheres 20.8
Pretectal area
nTPM: 22.9
2667 Female, age 75, unknown 25.6
2007 Male, age 72, unknown 24.5
2407 Male, age 75, both hemispheres 24.0
1817 Female, age 42, unknown 23.5
2273 Male, age 74, both hemispheres 23.4
1816 Male, age 51, unknown 22.8
2316 Male, age 76, right hemisphere 22.2
2224 Female, age 72, unknown 22.1
1944 Female, age 72, unknown 21.7
2825 Male, age 18, unknown 21.1
1815 Male, age 53, unknown 20.7
Red nucleus
nTPM: 20.2
2588 Male, age 74, left hemisphere 22.8
2785 Male, age 18, unknown 22.8
2227 Male, age 72, unknown 21.5
2769 Male, age 72, unknown 21.3
1821 Female, age 72, unknown 21.1
2584 Male, age 75, left hemisphere 20.8
1954 Female, age 42, unknown 19.9
1865 Male, age 51, unknown 19.6
1904 Male, age 53, unknown 19.0
2823 Male, age 76, right hemisphere 18.7
2503 Female, age 72, unknown 18.0
2725 Female, age 75, unknown 17.2
Substantia nigra
nTPM: 19.4
2583 Male, age 75, right hemisphere 23.1
1851 Male, age 51, unknown 20.9
2699 Male, age 18, unknown 20.9
1916 Female, age 42, unknown 20.7
2590 Female, age 75, unknown 20.1
1889 Female, age 72, unknown 19.3
2665 Male, age 74, both hemispheres 18.8
1941 Male, age 53, unknown 18.3
2409 Female, age 72, unknown 18.3
2241 Male, age 72, unknown 13.5
Superior colliculus
nTPM: 22.9
2664 Male, age 75, both hemispheres 34.8
1995 Male, age 72, unknown 25.8
1796 Male, age 53, unknown 23.0
1839 Male, age 51, unknown 22.1
1913 Female, age 42, unknown 21.8
2261 Male, age 18, unknown 21.6
1895 Male, age 76, right hemisphere 21.3
2668 Female, age 75, unknown 19.9
2087 Female, age 72, unknown 19.7
2587 Male, age 74, left hemisphere 19.3
Ventral tegmental area
nTPM: 19.5
2021 Male, age 53, unknown 21.4
1942 Male, age 51, unknown 20.5
1915 Female, age 42, unknown 20.4
2223 Female, age 72, unknown 19.3
2410 Female, age 72, unknown 18.9
2218 Male, age 76, both hemispheres 16.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 6.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 6.0
Samples: 139

Max nTPM: 18.0
Min nTPM: 3.0
Std nTPM: 2.1
Median nTPM: 5.6
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 18.0
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 14.3
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 13.6
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 13.3
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 10.8
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 10.4
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 10.0
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 9.7
GTEX-13N2G-0011-R2a-SM-5MR4Q 60-69 years, male 9.0
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 8.9
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 8.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 9.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 9.8
FF:10158-103A5 76 years, female 9.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 6.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 5.5
Samples: 4

Max nTPM: 6.6
Min nTPM: 4.8
Sample A Female 6.6
Sample B Female 4.8
Sample C Male 5.6
Sample D Male 4.9
Midbrain
nTPM: 6.2
Samples: 4

Max nTPM: 7.4
Min nTPM: 5.3
Sample A Female 5.7
Sample B Female 5.3
Sample C Male 7.4
Sample D Male 6.3
Periaqueductal gray
nTPM: 5.5
Samples: 3

Max nTPM: 6.5
Min nTPM: 5.0
Sample B Female 5.0
Sample C Male 6.5
Sample D Male 5.0
Superior colliculi
nTPM: 6.2
Samples: 4

Max nTPM: 7.5
Min nTPM: 4.9
Sample A Female 7.5
Sample B Female 4.9
Sample C Male 6.8
Sample D Male 5.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 15.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 15.8
Samples: 4

Max nTPM: 16.8
Min nTPM: 13.9
Sample A Male 16.8
Sample B Male 13.9
Sample C Female 16.2
Sample D Female 16.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.8
71616113 Antisense, RP_050927_02_E12, Mouse strain C57BL/6J (56 days, male) 0.8

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