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TRAPPC2L
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  • TRAPPC2L
PROTEIN SUMMARY SECTION OVERVIEW GENE INFORMATION RNA DATA ANTIBODY DATA
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

TRAPPC2L
Synonyms HSPC176
Gene descriptioni

Full gene name according to HGNC.

Trafficking protein particle complex subunit 2L
Protein classi

Assigned HPA protein class(es) for the encoded protein(s).

Disease related genes
Human disease related genes
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.

  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Intracellular
Protein evidence Evidence at protein level (all genes)
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 16
Cytoband q24.3
Chromosome location (bp) 88856220 - 88862686
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

9
Ensembl ENSG00000167515 (version 109)
Entrez gene 51693
HGNC HGNC:30887
UniProt Q9UL33 (UniProt - Evidence at protein level)
neXtProt NX_Q9UL33
GeneCards TRAPPC2L
Antibodypedia TRAPPC2L antibodies


PROTEIN FUNCTION
Protein function (UniProt)i

Useful information about the protein provided by UniProt.

Plays a role in vesicular transport from endoplasmic reticulum to Golgi.... show less
Biological process (UniProt)i

Keywords assigned by UniProt to proteins because they are involved in a particular biological process.

ER-Golgi transport, Transport
Gene summary (Entrez)i

Useful information about the gene from Entrez

This gene encodes a protein that interacts with the tethering factor trafficking protein particle (TRAPP complex). TRAPP complexes mediate the contact between vescicles and target membranes, and thus, are involved in vescicle-mediated transport of proteins and lipids. The encoded protein is related to the X-linked trafficking protein particle complex 2. A related pseudogene is located on the X chromosome. Alternative splicing results in multiple transcript variants encoding different isoforms. [provided by RefSeq, Jan 2016]... show less
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The ENSP identifier links to the Ensembl website protein summary, while the ENST identifier links to the Ensembl website transcript summary for the selected splice variant. The data in the UniProt column can be expanded to show links to all matching UniProt identifiers for this protein.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The Gene Ontology terms assigned to this protein are listed if expanding the Gene ontology column. The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide (according to a majority of the signal peptide predictors SPOCTOPUS, SignalP 4.0, and Phobius) and the number of predicted transmembrane region(s) (according to MDM) are also reported.
Splice variant SwissProt TrEMBL Protein class Gene ontology Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
TRAPPC2L-201
ENSP00000301021
ENST00000301021
Q9UL33
[Direct mapping] Trafficking protein particle complex subunit 2-like protein
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Disease related genes
Human disease related genes
   Nervous system diseases
   Epilepsy
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0005737 [cytoplasm]
GO:0005783 [endoplasmic reticulum]
GO:0005794 [Golgi apparatus]
GO:0005829 [cytosol]
GO:0006888 [endoplasmic reticulum to Golgi vesicle-mediated transport]
GO:0006901 [vesicle coating]
GO:0016192 [vesicle-mediated transport]
GO:0030008 [TRAPP complex]
GO:0043231 [intracellular membrane-bounded organelle]
GO:0048208 [COPII vesicle coating]
GO:0048471 [perinuclear region of cytoplasm]
GO:0099022 [vesicle tethering]
GO:1990071 [TRAPPII protein complex]
GO:1990072 [TRAPPIII protein complex]
Show all
140 aa
16.1 kDa
No 0
TRAPPC2L-202
ENSP00000455892
ENST00000561840
H3BQQ8
[Direct mapping] Trafficking protein particle complex subunit 2-like protein
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Nervous system diseases
   Epilepsy
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0006888 [endoplasmic reticulum to Golgi vesicle-mediated transport]
GO:0016192 [vesicle-mediated transport]
GO:0048208 [COPII vesicle coating]
GO:0048471 [perinuclear region of cytoplasm]
GO:0099022 [vesicle tethering]
GO:1990071 [TRAPPII protein complex]
GO:1990072 [TRAPPIII protein complex]
Show all
129 aa
14.8 kDa
No 0
TRAPPC2L-206
ENSP00000455447
ENST00000564365
H3BPS1
[Direct mapping] Trafficking protein particle complex subunit 2-like protein
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Nervous system diseases
   Epilepsy
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0006888 [endoplasmic reticulum to Golgi vesicle-mediated transport]
GO:0016192 [vesicle-mediated transport]
GO:0048208 [COPII vesicle coating]
GO:0048471 [perinuclear region of cytoplasm]
GO:0099022 [vesicle tethering]
GO:1990071 [TRAPPII protein complex]
GO:1990072 [TRAPPIII protein complex]
Show all
59 aa
6.8 kDa
No 0
TRAPPC2L-211
ENSP00000455100
ENST00000565504
H3BP13
[Direct mapping] Trafficking protein particle complex subunit 2-like protein
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Nervous system diseases
   Epilepsy
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005829 [cytosol]
GO:0006888 [endoplasmic reticulum to Golgi vesicle-mediated transport]
GO:0016192 [vesicle-mediated transport]
GO:0043231 [intracellular membrane-bounded organelle]
GO:0048208 [COPII vesicle coating]
GO:0048471 [perinuclear region of cytoplasm]
GO:0099022 [vesicle tethering]
GO:1990071 [TRAPPII protein complex]
GO:1990072 [TRAPPIII protein complex]
Show all
241 aa
27.3 kDa
No 0
TRAPPC2L-212
ENSP00000455235
ENST00000567312
A0A0B4J286
[Direct mapping] Trafficking protein particle complex subunit 2-like protein
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Nervous system diseases
   Epilepsy
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005829 [cytosol]
GO:0006888 [endoplasmic reticulum to Golgi vesicle-mediated transport]
GO:0016192 [vesicle-mediated transport]
GO:0043231 [intracellular membrane-bounded organelle]
GO:0048208 [COPII vesicle coating]
GO:0048471 [perinuclear region of cytoplasm]
GO:0099022 [vesicle tethering]
GO:1990071 [TRAPPII protein complex]
GO:1990072 [TRAPPIII protein complex]
Show all
109 aa
12.7 kDa
No 0
TRAPPC2L-213
ENSP00000457684
ENST00000567895
H3BUK6
[Direct mapping] Trafficking protein particle complex subunit 2-like protein
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Nervous system diseases
   Epilepsy
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0006888 [endoplasmic reticulum to Golgi vesicle-mediated transport]
GO:0016192 [vesicle-mediated transport]
GO:0048208 [COPII vesicle coating]
GO:0048471 [perinuclear region of cytoplasm]
GO:0099022 [vesicle tethering]
GO:1990071 [TRAPPII protein complex]
GO:1990072 [TRAPPIII protein complex]
Show all
109 aa
12.6 kDa
No 0
TRAPPC2L-214
ENSP00000457728
ENST00000568583
A0A0B4J294
[Direct mapping] Trafficking protein particle complex subunit 2-like protein
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Nervous system diseases
   Epilepsy
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005829 [cytosol]
GO:0006888 [endoplasmic reticulum to Golgi vesicle-mediated transport]
GO:0016192 [vesicle-mediated transport]
GO:0043231 [intracellular membrane-bounded organelle]
GO:0048208 [COPII vesicle coating]
GO:0048471 [perinuclear region of cytoplasm]
GO:0099022 [vesicle tethering]
GO:1990071 [TRAPPII protein complex]
GO:1990072 [TRAPPIII protein complex]
Show all
146 aa
16.7 kDa
No 0
TRAPPC2L-215
ENSP00000487584
ENST00000625770
H3BPN3
[Direct mapping] Trafficking protein particle complex subunit 2-like protein
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Nervous system diseases
   Epilepsy
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005829 [cytosol]
GO:0006888 [endoplasmic reticulum to Golgi vesicle-mediated transport]
GO:0016192 [vesicle-mediated transport]
GO:0043231 [intracellular membrane-bounded organelle]
GO:0048208 [COPII vesicle coating]
GO:0048471 [perinuclear region of cytoplasm]
GO:0099022 [vesicle tethering]
GO:1990071 [TRAPPII protein complex]
GO:1990072 [TRAPPIII protein complex]
Show all
75 aa
8.7 kDa
No 0
TRAPPC2L-216
ENSP00000512526
ENST00000696289
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Nervous system diseases
   Epilepsy
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0006888 [endoplasmic reticulum to Golgi vesicle-mediated transport]
Show all
139 aa
16.1 kDa
No 0

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