MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:21.3 nTPM
HPA Brain:32.0 nTPM
GTEx:21.3 nTPM
FANTOM5:13.7 Scaled Tags Per Million
Pig:7.3 nTPM
Mouse:3.1 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 32.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 24.0
2586 Male, age 75, left hemisphere 31.1
2828 Female, age 72, unknown 31.0
1833 Male, age 53, unknown 25.4
1870 Female, age 42, unknown 25.1
1830 Male, age 51, unknown 24.6
2019 Male, age 18, unknown 24.6
2666 Male, age 74, left hemisphere 21.7
1827 Male, age 72, unknown 21.5
2411 Female, age 72, unknown 20.0
2219 Male, age 76, both hemispheres 15.0
Dorsal raphe nucleus
nTPM: 27.7
2016 Female, age 72, unknown 32.2
2298 Female, age 72, unknown 29.3
1828 Male, age 53, unknown 27.2
2047 Male, age 72, unknown 26.9
2750 Male, age 76, both hemispheres 22.8
Inferior colliculus
nTPM: 20.6
1848 Female, age 42, unknown 21.6
1890 Male, age 53, unknown 21.4
2849 Male, age 72, unknown 21.2
2097 Female, age 72, unknown 18.2
Median raphe nucleus
nTPM: 20.7
2220 Male, age 76, midline 20.7
Periaquaductal grey, anterior
nTPM: 23.3
1795 Male, age 51, unknown 27.1
2502 Female, age 75, unknown 24.5
1947 Male, age 18, unknown 18.2
Periaquaductal grey, dorsal
nTPM: 26.6
2850 Male, age 76, both hemispheres 33.6
1831 Male, age 72, unknown 26.6
1840 Male, age 53, unknown 23.4
2464 Female, age 72, unknown 22.9
Periaquaductal grey, lateral
nTPM: 32.0
2140 Male, age 76, both hemispheres 36.8
2272 Male, age 74, both hemispheres 34.8
2053 Male, age 18, unknown 24.6
Pretectal area
nTPM: 23.3
2273 Male, age 74, both hemispheres 30.1
2224 Female, age 72, unknown 26.3
1817 Female, age 42, unknown 25.3
2825 Male, age 18, unknown 24.9
2407 Male, age 75, both hemispheres 23.8
2316 Male, age 76, right hemisphere 23.6
1815 Male, age 53, unknown 22.8
2667 Female, age 75, unknown 21.5
2007 Male, age 72, unknown 20.4
1816 Male, age 51, unknown 19.3
1944 Female, age 72, unknown 18.0
Red nucleus
nTPM: 25.7
2227 Male, age 72, unknown 29.4
2584 Male, age 75, left hemisphere 29.1
2769 Male, age 72, unknown 28.8
1954 Female, age 42, unknown 27.8
2823 Male, age 76, right hemisphere 26.4
1904 Male, age 53, unknown 25.9
2785 Male, age 18, unknown 25.6
2503 Female, age 72, unknown 25.2
1865 Male, age 51, unknown 24.8
2725 Female, age 75, unknown 22.5
2588 Male, age 74, left hemisphere 22.2
1821 Female, age 72, unknown 20.4
Substantia nigra
nTPM: 24.5
2699 Male, age 18, unknown 35.1
2583 Male, age 75, right hemisphere 30.6
2665 Male, age 74, both hemispheres 28.9
1851 Male, age 51, unknown 26.0
2590 Female, age 75, unknown 25.4
1916 Female, age 42, unknown 23.3
1889 Female, age 72, unknown 19.9
2409 Female, age 72, unknown 19.8
1941 Male, age 53, unknown 19.6
2241 Male, age 72, unknown 16.0
Superior colliculus
nTPM: 24.7
1995 Male, age 72, unknown 33.7
2664 Male, age 75, both hemispheres 31.2
1913 Female, age 42, unknown 27.3
2668 Female, age 75, unknown 25.9
1796 Male, age 53, unknown 24.6
2261 Male, age 18, unknown 23.5
2587 Male, age 74, left hemisphere 23.0
2087 Female, age 72, unknown 21.0
1839 Male, age 51, unknown 20.8
1895 Male, age 76, right hemisphere 16.1
Ventral tegmental area
nTPM: 24.6
2021 Male, age 53, unknown 29.5
2223 Female, age 72, unknown 27.3
1942 Male, age 51, unknown 25.9
1915 Female, age 42, unknown 22.9
2218 Male, age 76, both hemispheres 21.8
2410 Female, age 72, unknown 20.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 21.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 21.3
Samples: 139

Max nTPM: 53.4
Min nTPM: 5.1
Std nTPM: 7.9
Median nTPM: 19.3
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 53.4
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 49.8
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 44.7
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 43.5
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 38.4
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 37.0
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 37.0
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 36.6
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 35.8
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 35.1
GTEX-15RJE-0011-R2b-SM-79OMP 40-49 years, male 33.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 13.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 13.7
FF:10158-103A5 76 years, female 13.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 7.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 6.8
Samples: 4

Max nTPM: 7.6
Min nTPM: 5.8
Sample A Female 7.6
Sample B Female 7.2
Sample C Male 5.8
Sample D Male 6.5
Midbrain
nTPM: 6.5
Samples: 4

Max nTPM: 12.2
Min nTPM: 3.8
Sample A Female 12.2
Sample B Female 5.5
Sample C Male 4.3
Sample D Male 3.8
Periaqueductal gray
nTPM: 5.8
Samples: 3

Max nTPM: 7.0
Min nTPM: 4.8
Sample B Female 5.6
Sample C Male 7.0
Sample D Male 4.8
Superior colliculi
nTPM: 7.3
Samples: 4

Max nTPM: 13.1
Min nTPM: 3.8
Sample A Female 7.3
Sample B Female 13.1
Sample C Male 3.8
Sample D Male 5.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 3.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 3.1
Samples: 4

Max nTPM: 3.5
Min nTPM: 2.3
Sample A Male 3.2
Sample B Male 2.3
Sample C Female 3.5
Sample D Female 3.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
71991870 Antisense, RP_051012_03_F07, Mouse strain C57BL/6J (56 days, male) 0.1

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