HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Medium
Neuronal cells: High
RNA expressioni
Consensus:779.7 nTPM
HPA Brain:579.1 nTPM
GTEx:779.7 nTPM
FANTOM5:1241.4 Scaled Tags Per Million
Pig:953.4 nTPM
Mouse:1962.1 nTPM
Allen mouse:36.1 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA039247Antibody HPA043684Antibody HPA063394Antibody CAB008686
Glial cells MediumNot detectedNot detectedNot detected
Neuronal cells HighHighMediumMedium









HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 579.1
Sample id Sample description nTPM
Hippocampus
nTPM: 540.8
2529 Female, age 94, left hemisphere 708.8
1898 Male, age 80, left hemisphere 665.1
1911 Female, age 85, right hemisphere 490.7
1855 Male, age 76, left hemisphere 485.3
2621 Female, age 67, right hemisphere 478.9
2148 Female, age 91, left hemisphere 416.1
Dentate gyrus
nTPM: 536.2
2010 Male, age 76, both hemispheres 647.2
2528 Male, age 74, both hemispheres 624.5
2530 Female, age 94, left hemisphere 619.0
2246 Female, age 85, both hemispheres 489.6
1927 Female, age 91, both hemispheres 438.6
2531 Female, age 67, both hemispheres 398.1
Entorhinal gyrus
nTPM: 486.8
2117 Female, age 91, right hemisphere 617.0
2764 Male, age 80, right hemisphere 608.9
1938 Female, age 85, left hemisphere 502.9
1787 Male, age 76, left hemisphere 476.7
2613 Female, age 94, left hemisphere 367.7
2686 Male, age 75, right hemisphere 347.4
Hippocampus, CA1
nTPM: 512.5
2749 Male, age 80, left hemisphere 750.9
2527 Male, age 74, both hemispheres 487.2
1873 Female, age 85, both hemispheres 463.3
2045 Male, age 76, both hemispheres 459.6
2082 Female, age 91, right hemisphere 401.4
Hippocampus, CA2
nTPM: 534.1
2249 Male, age 74, both hemispheres 745.1
1963 Male, age 80, left hemisphere 594.1
1892 Male, age 76, both hemispheres 524.9
2437 Female, age 94, left hemisphere 483.0
1940 Female, age 85, left hemisphere 447.9
2113 Female, age 91, right hemisphere 409.8
Hippocampus, CA3
nTPM: 481.7
2137 Male, age 80, left hemisphere 607.2
1891 Female, age 85, both hemispheres 545.7
2436 Male, age 74, both hemispheres 501.3
2620 Female, age 94, left hemisphere 501.3
1867 Male, age 76, both hemispheres 496.9
2861 Female, age 67, both hemispheres 237.7
Parahippocampal cortex
nTPM: 431.1
1850 Male, age 80, both hemispheres 540.6
2532 Female, age 72, left hemisphere 540.0
1933 Female, age 85, both hemispheres 514.1
1990 Female, age 91, right hemisphere 484.9
2245 Female, age 91, both hemispheres 476.8
2250 Female, age 67, right hemisphere 424.9
2692 Male, age 74, both hemispheres 408.6
2018 Male, age 76, both hemispheres 377.6
2693 Female, age 94, both hemispheres 330.9
2622 Female, age 67, right hemisphere 212.7
Perirhinal gyrus
nTPM: 475.0
1794 Male, age 80, right hemisphere 526.0
2521 Female, age 94, right hemisphere 506.2
1847 Female, age 91, left hemisphere 478.2
1841 Female, age 85, right hemisphere 446.0
2848 Male, age 76, right hemisphere 418.7
Subiculum
nTPM: 579.1
1901 Male, age 80, both hemispheres 710.9
1977 Female, age 85, both hemispheres 687.5
2042 Male, age 76, both hemispheres 671.4
2438 Female, age 94, left hemisphere 540.5
2729 Female, age 91, right hemisphere 442.5
2619 Male, age 74, both hemispheres 421.9

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 779.7
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 779.7
Samples: 197

Max nTPM: 2083.3
Min nTPM: 251.7
Std nTPM: 308.1
Median nTPM: 739.4
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 2083.3
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 1802.1
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 1719.2
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 1701.0
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 1688.2
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 1610.6
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 1443.1
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 1370.5
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 1367.7
GTEX-1E2YA-0011-R1b-SM-CJI29 50-59 years, male 1345.4
GTEX-15ER7-0011-R1b-SM-7KUE1 20-29 years, female 1312.6
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 1241.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 1241.4
FF:10169-103B7 60 years, female 1698.0
FF:10153-102I9 76 years, female 784.8

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 953.4
Pig sample Sample description nTPM
Subiculum
nTPM: 822.2
Samples: 4

Max nTPM: 872.6
Min nTPM: 729.6
Sample A Female 856.4
Sample B Female 872.6
Sample C Male 830.2
Sample D Male 729.6
Dorsal hippocampus
nTPM: 953.4
Samples: 4

Max nTPM: 1101.1
Min nTPM: 639.3
Sample A Female 1093.3
Sample B Female 979.9
Sample C Male 1101.1
Sample D Male 639.3
Entorhinal cortex
nTPM: 765.3
Samples: 4

Max nTPM: 858.3
Min nTPM: 628.4
Sample A Female 800.5
Sample B Female 773.8
Sample C Male 858.3
Sample D Male 628.4
Ventral hippocampus
nTPM: 784.3
Samples: 4

Max nTPM: 1040.5
Min nTPM: 583.7
Sample A Female 705.8
Sample B Female 583.7
Sample C Male 1040.5
Sample D Male 807.0

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 1962.1
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 1962.1
Samples: 4

Max nTPM: 2320.4
Min nTPM: 1692.2
Sample A Male 1692.2
Sample B Male 1881.6
Sample C Female 1954.2
Sample D Female 2320.4
Hippocampal formation
nTPM: 1817.5
Samples: 4

Max nTPM: 2026.0
Min nTPM: 1566.1
Sample A Male 2026.0
Sample B Male 1566.1
Sample C Female 1865.6
Sample D Female 1812.3

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 36.1
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 36.1
68844164 Antisense, RP_050222_01_A07, Mouse strain C57BL/6J (56 days, male) 36.1

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