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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Ganglion cells :
Not detected
Inner nuclear layer:
Not detected
Inner plexiform layer:
Not detected
Limiting membrane:
Not detected
Nerve fiber layer:
Not detected
Outer plexiform layer:
Not detected
Photoreceptor cells:
High
Pigment epithelial cells:
Not detected
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
17.8
nTPM
GTEx:
17.8
nTPM
FANTOM5:
17.8
Scaled Tags Per Million
Pig:
26.8
nTPM
Mouse:
204.7
nTPM
RETINA - Extended tissue profilei
For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.
, antibody HPA058753
Pigment epithelial cells
Not detected
Photoreceptor cells
High
Limiting membrane
Not detected
Outer plexiform layer
Not detected
Inner nuclear layer
Not detected
Inner plexiform layer
Not detected
Ganglion cells
Not detected
Nerve fiber layer
Not detected
RETINA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM
17.8
GTEx sample id
Sample description
nTPM
Retina Average nTPM: 17.8
Samples: 105
Max nTPM: 65.5
Min nTPM: 1.7
Std nTPM: 10.0
Median nTPM: 0.0
218_1
71 years, female
65.5
354_1
81 years, female
48.7
319_1
81 years, male
38.5
316_1
62 years, male
38.1
6_1
73 years, female
34.8
386_1
76 years, male
34.4
353_1
82 years, female
34.2
318_1
68 years, male
32.9
350_1
84 years, female
31.6
163_1
78 years, male
31.4
322_1
76 years, male
31.3
355_1
70 years, female
30.3
518_1
75 years, female
30.3
447_1
81 years, male
28.0
351_1
91 years, male
27.5
4_1
88 years, female
27.0
379_1
60 years, male
26.7
348_1
84 years, male
26.5
320_1
89 years, female
25.8
405_1
91 years, male
25.6
506_1
65 years, male
25.1
17_1
71 years, male
23.8
389_1
86 years, female
23.5
177_1
74 years, male
23.2
356_1
87 years, female
23.1
145_1
84 years, male
22.9
377_1
82 years, female
22.9
349_1
83 years, male
22.3
352_1
62 years, male
22.3
295_1
61 years, female
21.2
468_1
89 years, male
21.2
243_1
75 years, male
20.7
394_1
75 years, female
20.4
335_1
73 years, female
20.3
251_1
78 years, male
20.2
173_1
67 years, male
19.7
292_1
71 years, male
19.6
452_1
88 years, female
19.5
480_1
63 years, male
19.1
503_1
68 years, male
18.9
189_1
76 years, male
18.6
153_1
70 years, female
18.5
375_1
74 years, female
18.3
162_1
79 years, female
18.2
43_1
64 years, female
18.0
376_1
75 years, female
17.9
265_1
87 years, male
17.5
321_1
62 years, female
17.5
517_1
88 years, male
17.5
246_1
77 years, male
17.4
172_1
72 years, female
17.2
291_1
76 years, male
17.1
264_1
73 years, female
16.8
526_1
61 years, male
16.8
35_1
74 years, female
16.3
254_1
77 years, female
16.3
425_1
59 years, female
16.3
293_1
68 years, female
15.6
307_1
66 years, female
15.6
406_1
79 years, male
15.6
396_1
62 years, male
15.4
384_1
83 years, male
14.7
115_1
83 years, male
14.3
495_1
57 years, female
14.2
142_1
61 years, female
14.0
490_1
67 years, female
13.8
308_1
70 years, female
13.6
2_1
77 years, female
13.4
18_1
88 years, male
13.4
288_1
66 years, female
12.7
315_1
62 years, female
12.7
9_1
66 years, female
12.5
42_1
85 years, male
12.3
286_1
68 years, female
12.2
499_1
55 years, female
11.7
237_1
82 years, male
10.5
120_1
70 years, female
10.3
311_1
78 years, male
10.1
324_1
76 years, male
9.8
126_1
63 years, male
9.5
137_1
83 years, male
9.5
139_1
64 years, female
9.5
317_1
60 years, male
9.5
314_1
67 years, male
9.3
347_1
72 years, male
9.2
466_1
57 years, female
9.2
217_1
76 years, male
9.0
81_1
67 years, male
8.5
149_1
88 years, male
8.5
109_1
81 years, female
8.4
313_1
79 years, female
8.1
117_1
61 years, male
8.0
501_1
88 years, male
7.1
404_1
82 years, female
6.9
89_1
63 years, male
6.4
229_1
69 years, female
6.4
415_1
77 years, female
6.1
119_1
70 years, female
6.0
41_1
94 years, female
5.6
32_1
67 years, male
5.5
266_1
85 years, male
5.5
99_1
64 years, male
2.9
491_1
89 years, female
2.3
414_1
84 years, female
1.8
413_1
59 years, female
1.7
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RETINA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
The Human Protein Atlas project is funded
