MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:155.3 nTPM
HPA Brain:116.0 nTPM
GTEx:155.3 nTPM
FANTOM5:377.0 Scaled Tags Per Million
Pig:69.0 nTPM
Mouse:23.8 nTPM
Allen mouse:15.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 116.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 102.3
1830 Male, age 51, unknown 119.6
1833 Male, age 53, unknown 112.9
2666 Male, age 74, left hemisphere 110.7
2586 Male, age 75, left hemisphere 109.8
2219 Male, age 76, both hemispheres 104.9
2828 Female, age 72, unknown 103.2
2019 Male, age 18, unknown 96.9
1870 Female, age 42, unknown 89.4
2411 Female, age 72, unknown 89.0
1827 Male, age 72, unknown 86.6
Dorsal raphe nucleus
nTPM: 83.2
2750 Male, age 76, both hemispheres 96.5
2016 Female, age 72, unknown 85.2
1828 Male, age 53, unknown 80.7
2047 Male, age 72, unknown 78.2
2298 Female, age 72, unknown 75.5
Inferior colliculus
nTPM: 84.5
2849 Male, age 72, unknown 116.1
1890 Male, age 53, unknown 83.7
1848 Female, age 42, unknown 73.0
2097 Female, age 72, unknown 65.3
Median raphe nucleus
nTPM: 99.8
2220 Male, age 76, midline 99.8
Periaquaductal grey, anterior
nTPM: 81.8
1795 Male, age 51, unknown 84.9
1947 Male, age 18, unknown 81.1
2502 Female, age 75, unknown 79.3
Periaquaductal grey, dorsal
nTPM: 97.9
2850 Male, age 76, both hemispheres 122.5
1831 Male, age 72, unknown 100.6
2464 Female, age 72, unknown 95.3
1840 Male, age 53, unknown 73.3
Periaquaductal grey, lateral
nTPM: 116.0
2272 Male, age 74, both hemispheres 128.8
2140 Male, age 76, both hemispheres 122.1
2053 Male, age 18, unknown 97.2
Pretectal area
nTPM: 92.4
2316 Male, age 76, right hemisphere 123.6
2407 Male, age 75, both hemispheres 122.8
2667 Female, age 75, unknown 103.0
2273 Male, age 74, both hemispheres 100.3
2825 Male, age 18, unknown 93.3
1815 Male, age 53, unknown 91.7
2224 Female, age 72, unknown 88.4
1816 Male, age 51, unknown 78.9
1944 Female, age 72, unknown 74.8
2007 Male, age 72, unknown 72.2
1817 Female, age 42, unknown 66.9
Red nucleus
nTPM: 108.7
2823 Male, age 76, right hemisphere 130.8
2769 Male, age 72, unknown 124.2
2588 Male, age 74, left hemisphere 123.2
2584 Male, age 75, left hemisphere 121.4
1904 Male, age 53, unknown 120.4
1865 Male, age 51, unknown 118.8
2227 Male, age 72, unknown 117.0
2785 Male, age 18, unknown 108.8
2503 Female, age 72, unknown 93.3
2725 Female, age 75, unknown 90.6
1954 Female, age 42, unknown 82.1
1821 Female, age 72, unknown 73.7
Substantia nigra
nTPM: 89.1
2699 Male, age 18, unknown 120.7
2583 Male, age 75, right hemisphere 110.4
2590 Female, age 75, unknown 105.2
2665 Male, age 74, both hemispheres 103.4
1941 Male, age 53, unknown 87.5
1851 Male, age 51, unknown 83.8
2409 Female, age 72, unknown 78.7
1889 Female, age 72, unknown 72.3
1916 Female, age 42, unknown 69.2
2241 Male, age 72, unknown 59.9
Superior colliculus
nTPM: 98.2
1913 Female, age 42, unknown 141.6
1995 Male, age 72, unknown 117.9
2664 Male, age 75, both hemispheres 103.5
1895 Male, age 76, right hemisphere 95.5
1839 Male, age 51, unknown 92.7
2087 Female, age 72, unknown 90.6
2668 Female, age 75, unknown 86.0
1796 Male, age 53, unknown 85.9
2587 Male, age 74, left hemisphere 84.8
2261 Male, age 18, unknown 83.7
Ventral tegmental area
nTPM: 89.5
2021 Male, age 53, unknown 105.1
2223 Female, age 72, unknown 98.3
2218 Male, age 76, both hemispheres 93.8
2410 Female, age 72, unknown 83.2
1942 Male, age 51, unknown 81.8
1915 Female, age 42, unknown 74.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 155.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 155.3
Samples: 139

Max nTPM: 454.8
Min nTPM: 51.1
Std nTPM: 57.7
Median nTPM: 156.9
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 454.8
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 312.9
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 306.0
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 286.2
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 282.3
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 280.7
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 272.7
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 245.5
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 238.4
GTEX-18464-0011-R2a-SM-731AL 50-59 years, male 224.9
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 221.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 377.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 377.0
FF:10158-103A5 76 years, female 377.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 69.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 69.1
Samples: 4

Max nTPM: 114.8
Min nTPM: 30.8
Sample A Female 30.8
Sample B Female 70.4
Sample C Male 60.2
Sample D Male 114.8
Midbrain
nTPM: 52.5
Samples: 4

Max nTPM: 66.3
Min nTPM: 41.7
Sample A Female 44.5
Sample B Female 66.3
Sample C Male 41.7
Sample D Male 57.6
Periaqueductal gray
nTPM: 56.7
Samples: 3

Max nTPM: 67.6
Min nTPM: 50.2
Sample B Female 52.2
Sample C Male 50.2
Sample D Male 67.6
Superior colliculi
nTPM: 50.1
Samples: 4

Max nTPM: 68.7
Min nTPM: 34.8
Sample A Female 34.8
Sample B Female 50.5
Sample C Male 46.4
Sample D Male 68.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 23.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 23.8
Samples: 4

Max nTPM: 33.7
Min nTPM: 19.2
Sample A Male 33.7
Sample B Male 21.7
Sample C Female 20.7
Sample D Female 19.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 15.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 15.0
77620457 Antisense, RP_070129_03_D05, Mouse strain C57BL/6J (56 days, male) 15.0

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