BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni
Consensus:167.9 nTPM
HPA Brain:122.1 nTPM
GTEx:167.9 nTPM
FANTOM5:319.4 Scaled Tags Per Million
Pig:61.7 nTPM
Mouse:12.1 nTPM
Allen mouse:15.7 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA061571
Glial cells Not detected
Neuronal cells Low



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 122.1
Sample id Sample description nTPM
Caudate nucleus
nTPM: 94.2
1781 Male, age 74, unknown 168.3
2289 Male, age 61, right hemisphere 128.4
2288 Male, age 75, left hemisphere 93.8
1854 Male, age 80, left hemisphere 89.9
2290 Female, age 72, unknown 78.8
2846 Female, age 79, unknown 75.9
2481 Female, age 94, left hemisphere 64.0
1857 Female, age 85, left hemisphere 54.3
Globus pallidus, externus
nTPM: 122.1
2567 Female, age 72, unknown 194.5
2646 Male, age 61, right hemisphere 168.8
2395 Male, age 75, both hemispheres 88.2
1996 Male, age 80, right hemisphere 84.6
2772 Female, age 79, unknown 74.5
Globus pallidus, internus
nTPM: 118.3
2566 Female, age 72, unknown 183.4
2111 Female, age 85, right hemisphere 161.0
2778 Female, age 91, both hemispheres 120.7
2037 Male, age 80, right hemisphere 111.9
1818 Male, age 74, unknown 105.6
2483 Female, age 94, right hemisphere 77.4
2287 Male, age 75, right hemisphere 68.2
Nucleus accumbens
nTPM: 91.5
2732 Male, age 80, right hemisphere 124.9
1783 Male, age 74, unknown 106.4
2391 Female, age 94, left hemisphere 105.6
2698 Female, age 72, unknown 94.2
2824 Male, age 61, right hemisphere 90.8
1806 Female, age 85, left hemisphere 72.5
2286 Male, age 75, left hemisphere 71.8
1856 Female, age 91, right hemisphere 65.7
Nucleus basalis of Meynert
nTPM: 115.7
2569 Male, age 61, both hemispheres 149.4
2821 Male, age 75, both hemispheres 112.7
2484 Female, age 94, left hemisphere 104.9
2393 Male, age 80, right hemisphere 95.7
Nucleus of the diagonal band
nTPM: 84.9
1979 Male, age 74, unknown 103.5
2195 Female, age 85, both hemispheres 97.9
2029 Male, age 61, right hemisphere 89.7
2775 Male, age 80, right hemisphere 76.6
1812 Female, age 91, both hemispheres 56.8
Putamen
nTPM: 99.0
2489 Female, age 72, unknown 144.9
2647 Male, age 75, left hemisphere 111.4
1829 Male, age 74, unknown 99.7
2466 Female, age 79, unknown 89.1
1838 Male, age 80, right hemisphere 88.5
1937 Female, age 91, right hemisphere 82.9
2482 Female, age 94, left hemisphere 76.5
Septal nuclei
nTPM: 93.6
2199 Male, age 80, right hemisphere 128.2
2059 Female, age 85, both hemispheres 115.7
2394 Male, age 61, left hemisphere 112.7
2629 Female, age 94, right hemisphere 88.1
2009 Female, age 91, both hemispheres 82.6
1960 Male, age 74, unknown 67.1
2031 Female, age 72, unknown 60.5
Stria terminalis, bed nucleus
nTPM: 91.9
2201 Male, age 74, unknown 102.5
2486 Female, age 94, both hemispheres 92.3
1974 Female, age 91, both hemispheres 81.0

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 167.9
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 159.6
Samples: 246

Max nTPM: 281.2
Min nTPM: 11.1
Std nTPM: 51.7
Median nTPM: 159.9
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 281.2
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 276.9
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 273.5
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 269.3
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 268.5
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 259.4
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 258.5
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 255.9
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 244.8
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 243.5
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 242.3
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 166.8
Samples: 246

Max nTPM: 431.2
Min nTPM: 19.5
Std nTPM: 58.2
Median nTPM: 161.1
GTEX-13OVH-0011-R6b-SM-5LUAX 70-79 years, male 431.2
GTEX-17EVQ-0011-R6a-SM-7189U 70-79 years, male 344.2
GTEX-13FHO-0011-R6b-SM-5LZX1 60-69 years, male 342.5
GTEX-12WSE-0011-R6b-SM-5LZV5 20-29 years, male 312.0
GTEX-ZE7O-0011-R6a-SM-57WCI 50-59 years, female 303.7
GTEX-XMD1-0011-R6A-SM-4AT5K 60-69 years, male 288.8
GTEX-14PQA-0011-R6b-SM-6AJAM 50-59 years, female 288.5
GTEX-13PDP-0011-R6b-SM-5O9D5 60-69 years, male 277.0
GTEX-13FHP-0011-R6b-SM-5LZY6 50-59 years, male 276.1
GTEX-1GMRU-0011-R6b-SM-A9G3B 50-59 years, male 275.6
GTEX-1F88E-0011-R6a-SM-CKZNW 60-69 years, female 275.2
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Brain - Putamen (basal ganglia)
Average nTPM: 167.9
Samples: 205

Max nTPM: 311.3
Min nTPM: 24.1
Std nTPM: 52.9
Median nTPM: 170.2
GTEX-12WSF-0011-R7b-SM-5HL99 70-79 years, male 311.3
GTEX-13FHO-0011-R7b-SM-5LZXD 60-69 years, male 307.9
GTEX-1GMR8-0011-R7b-SM-CJI2I 50-59 years, female 287.7
GTEX-1GMRU-0011-R7b-SM-A96TJ 50-59 years, male 284.4
GTEX-1H3NZ-0011-R7a-SM-A9SKD 60-69 years, male 274.9
GTEX-18464-0011-R7b-SM-731CM 50-59 years, male 268.8
GTEX-147GR-0011-R7a-SM-5S2RP 60-69 years, male 264.4
GTEX-13O3O-0011-R7b-SM-5P9GZ 60-69 years, female 258.7
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 256.6
GTEX-17HHY-0011-R7a-SM-718A1 50-59 years, male 256.2
GTEX-17EVQ-0011-R7a-SM-7EWDA 70-79 years, male 253.8
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 319.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 319.4
FF:10164-103B2 76 years, female 319.4
Nucleus accumbens
Scaled Tags Per Million: 213.1
FF:10037-101F1 23-56 years, mixed 213.1
Putamen
Scaled Tags Per Million: 259.7
FF:10176-103C5 60 years, female 259.7
Globus pallidus
Scaled Tags Per Million: 273.3
FF:10161-103A8 76 years, female 361.5
FF:10175-103C4 60 years, female 185.2

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 61.7
Pig sample Sample description nTPM
Caudate
nTPM: 49.6
Samples: 4

Max nTPM: 57.5
Min nTPM: 40.4
Sample A Female 45.2
Sample B Female 57.5
Sample C Male 40.4
Sample D Male 55.4
Putamen
nTPM: 61.7
Samples: 4

Max nTPM: 81.1
Min nTPM: 26.6
Sample A Female 80.3
Sample B Female 58.6
Sample C Male 26.6
Sample D Male 81.1
Septum
nTPM: 51.7
Samples: 4

Max nTPM: 66.6
Min nTPM: 41.2
Sample A Female 42.9
Sample B Female 56.0
Sample C Male 41.2
Sample D Male 66.6
Ventral pallidum
nTPM: 61.7
Samples: 4

Max nTPM: 88.1
Min nTPM: 34.2
Sample A Female 34.2
Sample B Female 57.6
Sample C Male 67.0
Sample D Male 88.1

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 12.1
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 11.0
Samples: 4

Max nTPM: 11.8
Min nTPM: 9.9
Sample A Male 11.8
Sample B Male 9.9
Sample C Female 11.8
Sample D Female 10.5
Septum
nTPM: 7.8
Samples: 4

Max nTPM: 9.4
Min nTPM: 6.1
Sample A Male 9.4
Sample B Male 7.5
Sample C Female 6.1
Sample D Female 8.1
Ventral forebrain
nTPM: 12.1
Samples: 4

Max nTPM: 17.3
Min nTPM: 7.9
Sample A Male 17.3
Sample B Male 12.0
Sample C Female 7.9
Sample D Female 11.3

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 15.7
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 15.7
77620457 Antisense, RP_070129_03_D05, Mouse strain C57BL/6J (56 days, male) 15.7
Pallidum
Expression energy: 14.8
77620457 Antisense, RP_070129_03_D05, Mouse strain C57BL/6J (56 days, male) 14.8

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