MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:13.0 nTPM
HPA Brain:40.0 nTPM
GTEx:13.0 nTPM
FANTOM5:37.3 Scaled Tags Per Million
Pig:31.0 nTPM
Mouse:129.8 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 40.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 31.6
2586 Male, age 75, left hemisphere 34.5
1827 Male, age 72, unknown 34.2
2411 Female, age 72, unknown 32.8
2828 Female, age 72, unknown 32.6
2219 Male, age 76, both hemispheres 32.3
1833 Male, age 53, unknown 31.7
2666 Male, age 74, left hemisphere 31.0
1830 Male, age 51, unknown 29.9
2019 Male, age 18, unknown 29.2
1870 Female, age 42, unknown 27.9
Dorsal raphe nucleus
nTPM: 33.0
2750 Male, age 76, both hemispheres 38.4
2047 Male, age 72, unknown 37.0
2298 Female, age 72, unknown 30.8
1828 Male, age 53, unknown 30.6
2016 Female, age 72, unknown 28.1
Inferior colliculus
nTPM: 28.6
1890 Male, age 53, unknown 29.8
2097 Female, age 72, unknown 29.7
1848 Female, age 42, unknown 27.5
2849 Male, age 72, unknown 27.5
Median raphe nucleus
nTPM: 40.0
2220 Male, age 76, midline 40.0
Periaquaductal grey, anterior
nTPM: 32.8
1947 Male, age 18, unknown 33.6
1795 Male, age 51, unknown 33.0
2502 Female, age 75, unknown 31.7
Periaquaductal grey, dorsal
nTPM: 26.8
2464 Female, age 72, unknown 27.9
2850 Male, age 76, both hemispheres 27.1
1840 Male, age 53, unknown 26.6
1831 Male, age 72, unknown 25.7
Periaquaductal grey, lateral
nTPM: 29.8
2272 Male, age 74, both hemispheres 31.9
2053 Male, age 18, unknown 30.0
2140 Male, age 76, both hemispheres 27.5
Pretectal area
nTPM: 31.3
2007 Male, age 72, unknown 36.8
1816 Male, age 51, unknown 36.3
1817 Female, age 42, unknown 33.5
2667 Female, age 75, unknown 32.6
1944 Female, age 72, unknown 32.3
1815 Male, age 53, unknown 32.1
2825 Male, age 18, unknown 30.4
2407 Male, age 75, both hemispheres 29.8
2273 Male, age 74, both hemispheres 27.8
2316 Male, age 76, right hemisphere 26.6
2224 Female, age 72, unknown 26.2
Red nucleus
nTPM: 33.1
2588 Male, age 74, left hemisphere 37.8
2584 Male, age 75, left hemisphere 36.2
1821 Female, age 72, unknown 33.7
2503 Female, age 72, unknown 33.7
2823 Male, age 76, right hemisphere 33.6
1904 Male, age 53, unknown 32.7
1954 Female, age 42, unknown 32.2
2769 Male, age 72, unknown 31.8
1865 Male, age 51, unknown 31.6
2725 Female, age 75, unknown 31.4
2785 Male, age 18, unknown 31.2
2227 Male, age 72, unknown 30.8
Substantia nigra
nTPM: 35.3
1916 Female, age 42, unknown 43.3
1941 Male, age 53, unknown 37.8
1851 Male, age 51, unknown 37.7
2583 Male, age 75, right hemisphere 35.6
2665 Male, age 74, both hemispheres 35.6
2590 Female, age 75, unknown 34.7
1889 Female, age 72, unknown 34.2
2699 Male, age 18, unknown 34.2
2241 Male, age 72, unknown 32.0
2409 Female, age 72, unknown 27.5
Superior colliculus
nTPM: 30.2
2261 Male, age 18, unknown 34.9
2664 Male, age 75, both hemispheres 32.1
2087 Female, age 72, unknown 32.0
2668 Female, age 75, unknown 31.6
1796 Male, age 53, unknown 31.4
2587 Male, age 74, left hemisphere 29.1
1895 Male, age 76, right hemisphere 28.8
1913 Female, age 42, unknown 28.8
1995 Male, age 72, unknown 27.3
1839 Male, age 51, unknown 26.2
Ventral tegmental area
nTPM: 34.1
2410 Female, age 72, unknown 36.2
2218 Male, age 76, both hemispheres 35.6
1915 Female, age 42, unknown 34.5
1942 Male, age 51, unknown 34.2
2223 Female, age 72, unknown 33.7
2021 Male, age 53, unknown 30.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 13.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 13.0
Samples: 139

Max nTPM: 22.5
Min nTPM: 6.7
Std nTPM: 3.0
Median nTPM: 12.5
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 22.5
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 21.5
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 21.4
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 20.3
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 19.7
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 19.5
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 18.4
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 18.3
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 18.1
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 17.7
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 17.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 37.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 37.3
FF:10158-103A5 76 years, female 37.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 31.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 25.7
Samples: 4

Max nTPM: 30.7
Min nTPM: 19.0
Sample A Female 30.7
Sample B Female 19.0
Sample C Male 27.9
Sample D Male 25.3
Midbrain
nTPM: 31.0
Samples: 4

Max nTPM: 40.6
Min nTPM: 24.2
Sample A Female 32.5
Sample B Female 24.2
Sample C Male 40.6
Sample D Male 26.6
Periaqueductal gray
nTPM: 22.0
Samples: 3

Max nTPM: 25.1
Min nTPM: 18.9
Sample B Female 21.9
Sample C Male 25.1
Sample D Male 18.9
Superior colliculi
nTPM: 30.2
Samples: 4

Max nTPM: 39.2
Min nTPM: 20.6
Sample A Female 32.8
Sample B Female 20.6
Sample C Male 39.2
Sample D Male 28.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 129.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 129.8
Samples: 4

Max nTPM: 135.6
Min nTPM: 124.8
Sample A Male 124.8
Sample B Male 131.3
Sample C Female 135.6
Sample D Female 127.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
68441604 Antisense, RP_041214_02_F09, Mouse strain C57BL/6J (56 days, male) 0.1

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