MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:30.8 nTPM
HPA Brain:38.3 nTPM
GTEx:30.8 nTPM
FANTOM5:12.5 Scaled Tags Per Million
Pig:30.4 nTPM
Mouse:28.1 nTPM
Allen mouse:9.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 38.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 36.5
2586 Male, age 75, left hemisphere 51.7
2828 Female, age 72, unknown 41.2
1827 Male, age 72, unknown 37.4
2219 Male, age 76, both hemispheres 36.9
1870 Female, age 42, unknown 35.7
2666 Male, age 74, left hemisphere 35.3
1830 Male, age 51, unknown 32.7
2019 Male, age 18, unknown 32.5
1833 Male, age 53, unknown 31.4
2411 Female, age 72, unknown 29.9
Dorsal raphe nucleus
nTPM: 32.4
2298 Female, age 72, unknown 35.0
2750 Male, age 76, both hemispheres 34.2
2047 Male, age 72, unknown 32.4
1828 Male, age 53, unknown 31.0
2016 Female, age 72, unknown 29.7
Inferior colliculus
nTPM: 33.4
2849 Male, age 72, unknown 37.8
1848 Female, age 42, unknown 33.1
1890 Male, age 53, unknown 33.1
2097 Female, age 72, unknown 29.8
Median raphe nucleus
nTPM: 34.5
2220 Male, age 76, midline 34.5
Periaquaductal grey, anterior
nTPM: 38.3
1795 Male, age 51, unknown 41.1
1947 Male, age 18, unknown 37.8
2502 Female, age 75, unknown 36.1
Periaquaductal grey, dorsal
nTPM: 32.2
1831 Male, age 72, unknown 34.4
2850 Male, age 76, both hemispheres 33.9
1840 Male, age 53, unknown 31.3
2464 Female, age 72, unknown 29.2
Periaquaductal grey, lateral
nTPM: 34.1
2140 Male, age 76, both hemispheres 35.1
2272 Male, age 74, both hemispheres 34.5
2053 Male, age 18, unknown 32.7
Pretectal area
nTPM: 37.3
2007 Male, age 72, unknown 42.2
2407 Male, age 75, both hemispheres 41.7
1944 Female, age 72, unknown 40.0
1816 Male, age 51, unknown 39.4
2667 Female, age 75, unknown 39.0
1817 Female, age 42, unknown 38.6
1815 Male, age 53, unknown 38.1
2224 Female, age 72, unknown 35.8
2825 Male, age 18, unknown 34.9
2273 Male, age 74, both hemispheres 32.8
2316 Male, age 76, right hemisphere 27.8
Red nucleus
nTPM: 35.0
2584 Male, age 75, left hemisphere 39.8
1904 Male, age 53, unknown 37.5
2588 Male, age 74, left hemisphere 36.4
2227 Male, age 72, unknown 36.2
2785 Male, age 18, unknown 35.6
1865 Male, age 51, unknown 35.2
2725 Female, age 75, unknown 35.0
2769 Male, age 72, unknown 35.0
2503 Female, age 72, unknown 34.6
1954 Female, age 42, unknown 33.4
1821 Female, age 72, unknown 30.9
2823 Male, age 76, right hemisphere 30.5
Substantia nigra
nTPM: 32.2
1916 Female, age 42, unknown 37.0
2583 Male, age 75, right hemisphere 36.9
2699 Male, age 18, unknown 35.5
1851 Male, age 51, unknown 34.4
2665 Male, age 74, both hemispheres 33.4
1941 Male, age 53, unknown 33.3
1889 Female, age 72, unknown 32.7
2590 Female, age 75, unknown 31.5
2409 Female, age 72, unknown 25.1
2241 Male, age 72, unknown 22.6
Superior colliculus
nTPM: 38.2
2664 Male, age 75, both hemispheres 46.2
1796 Male, age 53, unknown 42.9
2261 Male, age 18, unknown 41.6
2668 Female, age 75, unknown 38.7
1913 Female, age 42, unknown 38.5
2087 Female, age 72, unknown 38.3
1995 Male, age 72, unknown 35.9
2587 Male, age 74, left hemisphere 33.5
1895 Male, age 76, right hemisphere 33.3
1839 Male, age 51, unknown 33.0
Ventral tegmental area
nTPM: 31.6
2223 Female, age 72, unknown 35.7
2218 Male, age 76, both hemispheres 34.0
1915 Female, age 42, unknown 32.8
1942 Male, age 51, unknown 32.1
2021 Male, age 53, unknown 29.9
2410 Female, age 72, unknown 25.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 30.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 30.8
Samples: 139

Max nTPM: 54.0
Min nTPM: 18.7
Std nTPM: 5.6
Median nTPM: 29.7
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 54.0
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 47.1
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 44.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 43.1
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 43.0
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 42.1
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 41.7
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 40.7
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 38.9
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 38.7
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 38.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 12.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 12.5
FF:10158-103A5 76 years, female 12.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 30.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 26.1
Samples: 4

Max nTPM: 30.0
Min nTPM: 21.9
Sample A Female 30.0
Sample B Female 21.9
Sample C Male 29.2
Sample D Male 23.4
Midbrain
nTPM: 30.1
Samples: 4

Max nTPM: 36.3
Min nTPM: 23.9
Sample A Female 35.8
Sample B Female 23.9
Sample C Male 36.3
Sample D Male 24.3
Periaqueductal gray
nTPM: 24.0
Samples: 3

Max nTPM: 26.3
Min nTPM: 21.7
Sample B Female 23.9
Sample C Male 26.3
Sample D Male 21.7
Superior colliculi
nTPM: 30.4
Samples: 4

Max nTPM: 34.9
Min nTPM: 27.8
Sample A Female 27.9
Sample B Female 31.0
Sample C Male 34.9
Sample D Male 27.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 28.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 28.1
Samples: 4

Max nTPM: 30.6
Min nTPM: 24.2
Sample A Male 28.5
Sample B Male 24.2
Sample C Female 30.6
Sample D Female 29.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 9.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 9.1
513472 Antisense, RP_040810_01_G02, Mouse strain C57BL/6J (56 days, male) 9.1

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