MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:29.9 nTPM
HPA Brain:50.1 nTPM
GTEx:29.9 nTPM
FANTOM5:11.4 Scaled Tags Per Million
Pig:9.8 nTPM
Mouse:11.6 nTPM
Allen mouse:0.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 50.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 44.0
2586 Male, age 75, left hemisphere 58.5
2828 Female, age 72, unknown 49.3
1827 Male, age 72, unknown 46.9
2666 Male, age 74, left hemisphere 45.6
2019 Male, age 18, unknown 44.4
1833 Male, age 53, unknown 42.1
2219 Male, age 76, both hemispheres 41.3
2411 Female, age 72, unknown 38.7
1870 Female, age 42, unknown 37.9
1830 Male, age 51, unknown 35.3
Dorsal raphe nucleus
nTPM: 41.6
2298 Female, age 72, unknown 46.9
2016 Female, age 72, unknown 44.5
1828 Male, age 53, unknown 42.5
2750 Male, age 76, both hemispheres 39.3
2047 Male, age 72, unknown 34.8
Inferior colliculus
nTPM: 37.9
2849 Male, age 72, unknown 39.4
2097 Female, age 72, unknown 38.9
1890 Male, age 53, unknown 37.1
1848 Female, age 42, unknown 36.0
Median raphe nucleus
nTPM: 37.8
2220 Male, age 76, midline 37.8
Periaquaductal grey, anterior
nTPM: 50.1
2502 Female, age 75, unknown 55.8
1795 Male, age 51, unknown 51.9
1947 Male, age 18, unknown 42.7
Periaquaductal grey, dorsal
nTPM: 41.2
2464 Female, age 72, unknown 43.2
1831 Male, age 72, unknown 41.7
1840 Male, age 53, unknown 40.0
2850 Male, age 76, both hemispheres 39.7
Periaquaductal grey, lateral
nTPM: 41.9
2140 Male, age 76, both hemispheres 46.8
2272 Male, age 74, both hemispheres 42.9
2053 Male, age 18, unknown 36.1
Pretectal area
nTPM: 44.9
1816 Male, age 51, unknown 49.3
2007 Male, age 72, unknown 48.2
2273 Male, age 74, both hemispheres 46.5
1815 Male, age 53, unknown 44.6
1817 Female, age 42, unknown 44.5
2825 Male, age 18, unknown 44.2
2407 Male, age 75, both hemispheres 44.0
2316 Male, age 76, right hemisphere 43.9
2224 Female, age 72, unknown 43.3
2667 Female, age 75, unknown 43.3
1944 Female, age 72, unknown 42.6
Red nucleus
nTPM: 44.3
2588 Male, age 74, left hemisphere 52.6
2785 Male, age 18, unknown 50.3
2227 Male, age 72, unknown 49.8
2503 Female, age 72, unknown 49.8
2769 Male, age 72, unknown 49.8
2584 Male, age 75, left hemisphere 42.8
1904 Male, age 53, unknown 41.0
1954 Female, age 42, unknown 40.8
2725 Female, age 75, unknown 39.3
1865 Male, age 51, unknown 39.2
1821 Female, age 72, unknown 38.7
2823 Male, age 76, right hemisphere 38.0
Substantia nigra
nTPM: 37.2
2665 Male, age 74, both hemispheres 41.4
2583 Male, age 75, right hemisphere 41.1
1851 Male, age 51, unknown 40.2
1889 Female, age 72, unknown 40.0
1941 Male, age 53, unknown 39.5
1916 Female, age 42, unknown 38.8
2699 Male, age 18, unknown 38.1
2590 Female, age 75, unknown 32.7
2409 Female, age 72, unknown 31.5
2241 Male, age 72, unknown 28.3
Superior colliculus
nTPM: 45.2
2664 Male, age 75, both hemispheres 55.1
2668 Female, age 75, unknown 52.3
2261 Male, age 18, unknown 50.9
1796 Male, age 53, unknown 47.1
2087 Female, age 72, unknown 46.2
1995 Male, age 72, unknown 44.3
1839 Male, age 51, unknown 42.5
1913 Female, age 42, unknown 42.1
1895 Male, age 76, right hemisphere 36.0
2587 Male, age 74, left hemisphere 35.1
Ventral tegmental area
nTPM: 38.3
1942 Male, age 51, unknown 44.6
2021 Male, age 53, unknown 38.6
2223 Female, age 72, unknown 38.2
1915 Female, age 42, unknown 37.9
2218 Male, age 76, both hemispheres 35.7
2410 Female, age 72, unknown 34.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 29.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 29.9
Samples: 139

Max nTPM: 53.0
Min nTPM: 12.6
Std nTPM: 7.1
Median nTPM: 29.5
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 53.0
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 49.3
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 48.0
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 47.2
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 46.5
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 44.8
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 41.5
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 41.3
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 41.3
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 40.4
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 40.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 11.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 11.4
FF:10158-103A5 76 years, female 11.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 9.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 7.3
Samples: 4

Max nTPM: 9.5
Min nTPM: 5.2
Sample A Female 9.5
Sample B Female 7.5
Sample C Male 6.9
Sample D Male 5.2
Midbrain
nTPM: 8.8
Samples: 4

Max nTPM: 9.8
Min nTPM: 7.8
Sample A Female 9.3
Sample B Female 9.8
Sample C Male 7.8
Sample D Male 8.3
Periaqueductal gray
nTPM: 9.3
Samples: 3

Max nTPM: 10.4
Min nTPM: 8.6
Sample B Female 8.6
Sample C Male 10.4
Sample D Male 9.0
Superior colliculi
nTPM: 9.9
Samples: 4

Max nTPM: 11.7
Min nTPM: 7.6
Sample A Female 11.7
Sample B Female 11.7
Sample C Male 7.6
Sample D Male 8.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 11.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 11.6
Samples: 4

Max nTPM: 14.8
Min nTPM: 9.3
Sample A Male 9.3
Sample B Male 14.8
Sample C Female 11.8
Sample D Female 10.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
70946183 Antisense, RP_050407_01_B05, Mouse strain C57BL/6J (56 days, male) 0.2

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