MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:8.6 nTPM
HPA Brain:18.3 nTPM
GTEx:8.6 nTPM
FANTOM5:10.6 Scaled Tags Per Million
Pig:17.7 nTPM
Mouse:12.8 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 18.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 11.6
2666 Male, age 74, left hemisphere 16.2
2019 Male, age 18, unknown 12.5
2828 Female, age 72, unknown 12.5
2586 Male, age 75, left hemisphere 12.0
1833 Male, age 53, unknown 11.1
1870 Female, age 42, unknown 10.8
2411 Female, age 72, unknown 10.6
1827 Male, age 72, unknown 10.2
1830 Male, age 51, unknown 10.1
2219 Male, age 76, both hemispheres 9.9
Dorsal raphe nucleus
nTPM: 13.9
2298 Female, age 72, unknown 15.4
1828 Male, age 53, unknown 14.3
2016 Female, age 72, unknown 13.6
2047 Male, age 72, unknown 13.0
2750 Male, age 76, both hemispheres 12.9
Inferior colliculus
nTPM: 10.1
1890 Male, age 53, unknown 11.2
2097 Female, age 72, unknown 10.4
1848 Female, age 42, unknown 9.4
2849 Male, age 72, unknown 9.3
Median raphe nucleus
nTPM: 18.3
2220 Male, age 76, midline 18.3
Periaquaductal grey, anterior
nTPM: 12.5
1795 Male, age 51, unknown 13.7
1947 Male, age 18, unknown 12.2
2502 Female, age 75, unknown 11.5
Periaquaductal grey, dorsal
nTPM: 14.7
1831 Male, age 72, unknown 18.1
1840 Male, age 53, unknown 14.5
2850 Male, age 76, both hemispheres 14.3
2464 Female, age 72, unknown 12.0
Periaquaductal grey, lateral
nTPM: 13.3
2140 Male, age 76, both hemispheres 14.4
2272 Male, age 74, both hemispheres 14.4
2053 Male, age 18, unknown 11.2
Pretectal area
nTPM: 12.1
1816 Male, age 51, unknown 15.5
2224 Female, age 72, unknown 14.4
1817 Female, age 42, unknown 14.1
1944 Female, age 72, unknown 13.6
2273 Male, age 74, both hemispheres 12.5
2007 Male, age 72, unknown 11.8
1815 Male, age 53, unknown 11.6
2316 Male, age 76, right hemisphere 11.2
2667 Female, age 75, unknown 11.1
2825 Male, age 18, unknown 10.1
2407 Male, age 75, both hemispheres 7.8
Red nucleus
nTPM: 11.4
2588 Male, age 74, left hemisphere 17.2
2785 Male, age 18, unknown 13.1
2823 Male, age 76, right hemisphere 12.4
2503 Female, age 72, unknown 11.4
1821 Female, age 72, unknown 11.3
1904 Male, age 53, unknown 11.2
2769 Male, age 72, unknown 11.1
2725 Female, age 75, unknown 10.5
2227 Male, age 72, unknown 9.8
2584 Male, age 75, left hemisphere 9.7
1954 Female, age 42, unknown 9.3
1865 Male, age 51, unknown 9.2
Substantia nigra
nTPM: 11.4
2665 Male, age 74, both hemispheres 18.7
1851 Male, age 51, unknown 12.1
2241 Male, age 72, unknown 12.1
2590 Female, age 75, unknown 11.8
1916 Female, age 42, unknown 11.1
2699 Male, age 18, unknown 11.0
1889 Female, age 72, unknown 10.5
1941 Male, age 53, unknown 10.0
2409 Female, age 72, unknown 8.4
2583 Male, age 75, right hemisphere 8.2
Superior colliculus
nTPM: 12.0
2087 Female, age 72, unknown 15.0
2668 Female, age 75, unknown 13.9
2261 Male, age 18, unknown 13.4
1995 Male, age 72, unknown 13.2
2587 Male, age 74, left hemisphere 12.8
1913 Female, age 42, unknown 12.1
2664 Male, age 75, both hemispheres 10.9
1796 Male, age 53, unknown 10.5
1839 Male, age 51, unknown 9.8
1895 Male, age 76, right hemisphere 8.3
Ventral tegmental area
nTPM: 11.9
2021 Male, age 53, unknown 13.7
1942 Male, age 51, unknown 12.6
2223 Female, age 72, unknown 11.9
2218 Male, age 76, both hemispheres 11.6
2410 Female, age 72, unknown 11.2
1915 Female, age 42, unknown 10.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 8.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 8.6
Samples: 139

Max nTPM: 32.1
Min nTPM: 4.2
Std nTPM: 3.8
Median nTPM: 7.7
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 32.1
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 24.3
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 22.9
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 20.6
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 19.1
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 14.8
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 14.6
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 14.0
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 13.8
GTEX-18464-0011-R2a-SM-731AL 50-59 years, male 13.6
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 13.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 10.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 10.6
FF:10158-103A5 76 years, female 10.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 17.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 13.7
Samples: 4

Max nTPM: 18.5
Min nTPM: 8.5
Sample A Female 15.3
Sample B Female 18.5
Sample C Male 12.6
Sample D Male 8.5
Midbrain
nTPM: 12.3
Samples: 4

Max nTPM: 22.0
Min nTPM: 8.0
Sample A Female 22.0
Sample B Female 9.9
Sample C Male 9.3
Sample D Male 8.0
Periaqueductal gray
nTPM: 9.5
Samples: 3

Max nTPM: 11.4
Min nTPM: 8.0
Sample B Female 8.0
Sample C Male 11.4
Sample D Male 9.1
Superior colliculi
nTPM: 17.7
Samples: 4

Max nTPM: 31.1
Min nTPM: 9.9
Sample A Female 19.5
Sample B Female 31.1
Sample C Male 9.9
Sample D Male 10.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 12.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 12.8
Samples: 4

Max nTPM: 14.0
Min nTPM: 11.6
Sample A Male 11.6
Sample B Male 12.1
Sample C Female 13.6
Sample D Female 14.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
70919089 Antisense, RP_050712_04_B05, Mouse strain C57BL/6J (56 days, male) 0.0

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