MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:4.0 nTPM
HPA Brain:8.8 nTPM
GTEx:4.0 nTPM
FANTOM5:4.0 Scaled Tags Per Million
Pig:9.1 nTPM
Mouse:19.5 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 8.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 7.7
2586 Male, age 75, left hemisphere 12.0
2219 Male, age 76, both hemispheres 11.0
2828 Female, age 72, unknown 8.1
1827 Male, age 72, unknown 8.0
1870 Female, age 42, unknown 7.5
1833 Male, age 53, unknown 7.2
1830 Male, age 51, unknown 6.7
2411 Female, age 72, unknown 5.9
2666 Male, age 74, left hemisphere 5.4
2019 Male, age 18, unknown 5.1
Dorsal raphe nucleus
nTPM: 8.0
2016 Female, age 72, unknown 9.6
2047 Male, age 72, unknown 8.6
2298 Female, age 72, unknown 7.9
1828 Male, age 53, unknown 7.4
2750 Male, age 76, both hemispheres 6.2
Inferior colliculus
nTPM: 7.6
2849 Male, age 72, unknown 9.2
1890 Male, age 53, unknown 7.9
1848 Female, age 42, unknown 6.8
2097 Female, age 72, unknown 6.7
Median raphe nucleus
nTPM: 7.6
2220 Male, age 76, midline 7.6
Periaquaductal grey, anterior
nTPM: 8.8
1947 Male, age 18, unknown 10.8
1795 Male, age 51, unknown 9.7
2502 Female, age 75, unknown 5.8
Periaquaductal grey, dorsal
nTPM: 8.6
1840 Male, age 53, unknown 9.5
2464 Female, age 72, unknown 8.6
2850 Male, age 76, both hemispheres 8.6
1831 Male, age 72, unknown 7.9
Periaquaductal grey, lateral
nTPM: 8.4
2272 Male, age 74, both hemispheres 9.8
2140 Male, age 76, both hemispheres 8.0
2053 Male, age 18, unknown 7.4
Pretectal area
nTPM: 7.5
2273 Male, age 74, both hemispheres 9.8
2316 Male, age 76, right hemisphere 9.5
2224 Female, age 72, unknown 9.0
2667 Female, age 75, unknown 7.6
2825 Male, age 18, unknown 7.3
1817 Female, age 42, unknown 7.1
2407 Male, age 75, both hemispheres 7.1
1944 Female, age 72, unknown 6.6
1815 Male, age 53, unknown 6.3
2007 Male, age 72, unknown 6.2
1816 Male, age 51, unknown 5.8
Red nucleus
nTPM: 7.2
2725 Female, age 75, unknown 10.0
2584 Male, age 75, left hemisphere 8.3
2785 Male, age 18, unknown 8.3
2769 Male, age 72, unknown 7.8
1904 Male, age 53, unknown 7.4
1821 Female, age 72, unknown 6.8
2823 Male, age 76, right hemisphere 6.8
2588 Male, age 74, left hemisphere 6.6
1865 Male, age 51, unknown 6.5
1954 Female, age 42, unknown 6.3
2227 Male, age 72, unknown 6.0
2503 Female, age 72, unknown 5.9
Substantia nigra
nTPM: 6.9
2409 Female, age 72, unknown 7.7
2665 Male, age 74, both hemispheres 7.7
1851 Male, age 51, unknown 7.6
2583 Male, age 75, right hemisphere 7.4
2699 Male, age 18, unknown 7.1
1889 Female, age 72, unknown 6.7
1916 Female, age 42, unknown 6.5
2590 Female, age 75, unknown 6.5
1941 Male, age 53, unknown 6.1
2241 Male, age 72, unknown 5.8
Superior colliculus
nTPM: 7.0
1839 Male, age 51, unknown 8.8
1995 Male, age 72, unknown 8.0
1796 Male, age 53, unknown 7.8
1913 Female, age 42, unknown 7.5
2261 Male, age 18, unknown 7.5
2664 Male, age 75, both hemispheres 7.4
2668 Female, age 75, unknown 7.3
1895 Male, age 76, right hemisphere 5.6
2587 Male, age 74, left hemisphere 5.5
2087 Female, age 72, unknown 4.5
Ventral tegmental area
nTPM: 6.9
1915 Female, age 42, unknown 8.4
2021 Male, age 53, unknown 7.5
2223 Female, age 72, unknown 6.8
1942 Male, age 51, unknown 6.7
2218 Male, age 76, both hemispheres 6.2
2410 Female, age 72, unknown 6.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 4.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 4.0
Samples: 139

Max nTPM: 8.6
Min nTPM: 0.7
Std nTPM: 1.3
Median nTPM: 3.8
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 8.6
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 7.9
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 7.9
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 7.2
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 7.0
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 6.7
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 6.7
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 6.6
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 6.5
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 6.3
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 6.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 4.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 4.0
FF:10158-103A5 76 years, female 4.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 9.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 8.8
Samples: 4

Max nTPM: 10.7
Min nTPM: 6.8
Sample A Female 9.0
Sample B Female 6.8
Sample C Male 8.7
Sample D Male 10.7
Midbrain
nTPM: 9.1
Samples: 4

Max nTPM: 16.8
Min nTPM: 5.8
Sample A Female 16.8
Sample B Female 7.7
Sample C Male 5.8
Sample D Male 6.0
Periaqueductal gray
nTPM: 6.0
Samples: 3

Max nTPM: 6.5
Min nTPM: 5.3
Sample B Female 5.3
Sample C Male 6.2
Sample D Male 6.5
Superior colliculi
nTPM: 7.5
Samples: 4

Max nTPM: 8.6
Min nTPM: 6.1
Sample A Female 8.4
Sample B Female 6.7
Sample C Male 6.1
Sample D Male 8.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 19.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 19.5
Samples: 4

Max nTPM: 21.4
Min nTPM: 17.2
Sample A Male 17.2
Sample B Male 18.5
Sample C Female 21.0
Sample D Female 21.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
69202496 Antisense, RP_050324_03_G05, Mouse strain C57BL/6J (56 days, male) 0.1

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