MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:66.9 nTPM
HPA Brain:93.2 nTPM
GTEx:66.9 nTPM
FANTOM5:102.9 Scaled Tags Per Million
Pig:73.4 nTPM
Mouse:153.9 nTPM
Allen mouse:8.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 93.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 82.0
2586 Male, age 75, left hemisphere 97.7
2666 Male, age 74, left hemisphere 94.7
1827 Male, age 72, unknown 91.4
2019 Male, age 18, unknown 85.8
2828 Female, age 72, unknown 82.4
2219 Male, age 76, both hemispheres 81.5
2411 Female, age 72, unknown 77.2
1870 Female, age 42, unknown 72.8
1833 Male, age 53, unknown 70.3
1830 Male, age 51, unknown 65.9
Dorsal raphe nucleus
nTPM: 73.3
2298 Female, age 72, unknown 85.2
2047 Male, age 72, unknown 76.9
1828 Male, age 53, unknown 74.7
2750 Male, age 76, both hemispheres 70.9
2016 Female, age 72, unknown 59.0
Inferior colliculus
nTPM: 75.1
2097 Female, age 72, unknown 78.5
2849 Male, age 72, unknown 77.9
1848 Female, age 42, unknown 76.2
1890 Male, age 53, unknown 67.7
Median raphe nucleus
nTPM: 81.2
2220 Male, age 76, midline 81.2
Periaquaductal grey, anterior
nTPM: 93.2
1795 Male, age 51, unknown 96.0
1947 Male, age 18, unknown 93.7
2502 Female, age 75, unknown 89.8
Periaquaductal grey, dorsal
nTPM: 66.3
1840 Male, age 53, unknown 70.4
2464 Female, age 72, unknown 66.4
1831 Male, age 72, unknown 65.8
2850 Male, age 76, both hemispheres 62.5
Periaquaductal grey, lateral
nTPM: 64.6
2272 Male, age 74, both hemispheres 67.3
2053 Male, age 18, unknown 67.1
2140 Male, age 76, both hemispheres 59.3
Pretectal area
nTPM: 88.4
1816 Male, age 51, unknown 116.5
2007 Male, age 72, unknown 115.1
1817 Female, age 42, unknown 107.1
1944 Female, age 72, unknown 107.1
1815 Male, age 53, unknown 93.8
2667 Female, age 75, unknown 87.9
2224 Female, age 72, unknown 79.1
2825 Male, age 18, unknown 73.7
2407 Male, age 75, both hemispheres 72.8
2316 Male, age 76, right hemisphere 60.0
2273 Male, age 74, both hemispheres 59.5
Red nucleus
nTPM: 73.7
2785 Male, age 18, unknown 86.3
2584 Male, age 75, left hemisphere 84.1
1821 Female, age 72, unknown 80.5
2725 Female, age 75, unknown 77.6
1954 Female, age 42, unknown 73.4
2588 Male, age 74, left hemisphere 72.6
2769 Male, age 72, unknown 72.5
2227 Male, age 72, unknown 68.8
2503 Female, age 72, unknown 68.0
2823 Male, age 76, right hemisphere 68.0
1865 Male, age 51, unknown 67.2
1904 Male, age 53, unknown 65.3
Substantia nigra
nTPM: 82.5
1941 Male, age 53, unknown 108.4
1916 Female, age 42, unknown 100.0
2665 Male, age 74, both hemispheres 98.1
1889 Female, age 72, unknown 93.7
1851 Male, age 51, unknown 86.6
2583 Male, age 75, right hemisphere 81.6
2590 Female, age 75, unknown 72.9
2699 Male, age 18, unknown 66.1
2241 Male, age 72, unknown 65.2
2409 Female, age 72, unknown 52.7
Superior colliculus
nTPM: 80.2
2087 Female, age 72, unknown 92.7
2664 Male, age 75, both hemispheres 91.5
1796 Male, age 53, unknown 89.0
2261 Male, age 18, unknown 87.5
2668 Female, age 75, unknown 84.7
1895 Male, age 76, right hemisphere 76.9
1839 Male, age 51, unknown 76.6
2587 Male, age 74, left hemisphere 72.2
1913 Female, age 42, unknown 66.5
1995 Male, age 72, unknown 64.9
Ventral tegmental area
nTPM: 78.0
2410 Female, age 72, unknown 88.2
2218 Male, age 76, both hemispheres 87.6
1915 Female, age 42, unknown 85.7
1942 Male, age 51, unknown 72.4
2223 Female, age 72, unknown 71.5
2021 Male, age 53, unknown 62.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 66.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 66.9
Samples: 139

Max nTPM: 193.3
Min nTPM: 37.4
Std nTPM: 22.5
Median nTPM: 60.7
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 193.3
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 152.7
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 118.2
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 116.2
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 114.2
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 106.3
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 106.0
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 100.9
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 100.8
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 100.8
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 98.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 102.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 102.9
FF:10158-103A5 76 years, female 102.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 73.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 64.9
Samples: 4

Max nTPM: 82.6
Min nTPM: 44.1
Sample A Female 82.4
Sample B Female 50.5
Sample C Male 82.6
Sample D Male 44.1
Midbrain
nTPM: 72.3
Samples: 4

Max nTPM: 94.3
Min nTPM: 56.1
Sample A Female 65.2
Sample B Female 56.1
Sample C Male 94.3
Sample D Male 73.6
Periaqueductal gray
nTPM: 54.4
Samples: 3

Max nTPM: 68.6
Min nTPM: 47.3
Sample B Female 47.3
Sample C Male 68.6
Sample D Male 47.4
Superior colliculi
nTPM: 73.4
Samples: 4

Max nTPM: 87.2
Min nTPM: 47.5
Sample A Female 85.1
Sample B Female 47.5
Sample C Male 87.2
Sample D Male 73.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 153.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 153.9
Samples: 4

Max nTPM: 159.4
Min nTPM: 148.9
Sample A Male 159.4
Sample B Male 153.8
Sample C Female 148.9
Sample D Female 153.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 8.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 8.6
68080680 Antisense, RP_040929_01_D10, Mouse strain C57BL/6J (56 days, male) 8.6

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