MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:131.4 nTPM
HPA Brain:119.8 nTPM
GTEx:131.4 nTPM
FANTOM5:155.2 Scaled Tags Per Million
Pig:87.7 nTPM
Mouse:187.6 nTPM
Allen mouse:9.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 119.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 108.2
2019 Male, age 18, unknown 133.1
2411 Female, age 72, unknown 126.4
1827 Male, age 72, unknown 120.3
2586 Male, age 75, left hemisphere 110.3
2828 Female, age 72, unknown 107.4
2666 Male, age 74, left hemisphere 103.9
1870 Female, age 42, unknown 99.2
2219 Male, age 76, both hemispheres 98.8
1833 Male, age 53, unknown 94.8
1830 Male, age 51, unknown 88.1
Dorsal raphe nucleus
nTPM: 107.0
2298 Female, age 72, unknown 121.9
1828 Male, age 53, unknown 113.2
2047 Male, age 72, unknown 107.1
2750 Male, age 76, both hemispheres 101.4
2016 Female, age 72, unknown 91.6
Inferior colliculus
nTPM: 99.9
2097 Female, age 72, unknown 110.7
1890 Male, age 53, unknown 108.2
1848 Female, age 42, unknown 98.2
2849 Male, age 72, unknown 82.6
Median raphe nucleus
nTPM: 86.8
2220 Male, age 76, midline 86.8
Periaquaductal grey, anterior
nTPM: 103.0
1947 Male, age 18, unknown 111.2
1795 Male, age 51, unknown 109.3
2502 Female, age 75, unknown 88.5
Periaquaductal grey, dorsal
nTPM: 83.1
2464 Female, age 72, unknown 94.0
1831 Male, age 72, unknown 83.9
1840 Male, age 53, unknown 83.3
2850 Male, age 76, both hemispheres 71.2
Periaquaductal grey, lateral
nTPM: 87.7
2272 Male, age 74, both hemispheres 101.5
2053 Male, age 18, unknown 85.0
2140 Male, age 76, both hemispheres 76.6
Pretectal area
nTPM: 115.0
2007 Male, age 72, unknown 154.8
1817 Female, age 42, unknown 140.5
1816 Male, age 51, unknown 139.0
2667 Female, age 75, unknown 125.5
1944 Female, age 72, unknown 124.0
1815 Male, age 53, unknown 114.2
2273 Male, age 74, both hemispheres 98.5
2224 Female, age 72, unknown 96.8
2316 Male, age 76, right hemisphere 93.4
2407 Male, age 75, both hemispheres 92.7
2825 Male, age 18, unknown 85.6
Red nucleus
nTPM: 112.0
1821 Female, age 72, unknown 134.4
2785 Male, age 18, unknown 127.3
2588 Male, age 74, left hemisphere 121.1
2725 Female, age 75, unknown 119.8
2503 Female, age 72, unknown 118.5
2769 Male, age 72, unknown 110.2
2227 Male, age 72, unknown 108.4
1954 Female, age 42, unknown 106.0
1865 Male, age 51, unknown 103.7
1904 Male, age 53, unknown 101.9
2823 Male, age 76, right hemisphere 100.1
2584 Male, age 75, left hemisphere 92.3
Substantia nigra
nTPM: 119.8
1916 Female, age 42, unknown 155.1
1941 Male, age 53, unknown 136.8
1851 Male, age 51, unknown 135.5
1889 Female, age 72, unknown 125.8
2665 Male, age 74, both hemispheres 118.9
2409 Female, age 72, unknown 113.8
2241 Male, age 72, unknown 110.3
2590 Female, age 75, unknown 106.5
2699 Male, age 18, unknown 101.1
2583 Male, age 75, right hemisphere 94.0
Superior colliculus
nTPM: 100.8
1796 Male, age 53, unknown 116.5
2087 Female, age 72, unknown 115.7
1895 Male, age 76, right hemisphere 109.7
2668 Female, age 75, unknown 107.9
2261 Male, age 18, unknown 103.2
2587 Male, age 74, left hemisphere 101.1
1913 Female, age 42, unknown 94.5
1839 Male, age 51, unknown 90.5
1995 Male, age 72, unknown 85.6
2664 Male, age 75, both hemispheres 82.9
Ventral tegmental area
nTPM: 103.9
2410 Female, age 72, unknown 125.1
1915 Female, age 42, unknown 123.2
2218 Male, age 76, both hemispheres 107.3
1942 Male, age 51, unknown 98.9
2223 Female, age 72, unknown 88.9
2021 Male, age 53, unknown 80.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 131.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 131.4
Samples: 139

Max nTPM: 305.1
Min nTPM: 65.6
Std nTPM: 32.3
Median nTPM: 127.0
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 305.1
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 217.2
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 213.1
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 189.4
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 187.9
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 184.8
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 182.4
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 181.9
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 178.2
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 177.9
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 177.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 155.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 155.2
FF:10158-103A5 76 years, female 155.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 87.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 68.4
Samples: 4

Max nTPM: 93.2
Min nTPM: 52.5
Sample A Female 93.2
Sample B Female 54.7
Sample C Male 73.1
Sample D Male 52.5
Midbrain
nTPM: 78.3
Samples: 4

Max nTPM: 90.5
Min nTPM: 66.3
Sample A Female 77.5
Sample B Female 66.3
Sample C Male 90.5
Sample D Male 79.0
Periaqueductal gray
nTPM: 61.0
Samples: 3

Max nTPM: 67.7
Min nTPM: 52.4
Sample B Female 62.9
Sample C Male 67.7
Sample D Male 52.4
Superior colliculi
nTPM: 87.7
Samples: 4

Max nTPM: 110.8
Min nTPM: 67.4
Sample A Female 110.8
Sample B Female 67.4
Sample C Male 93.2
Sample D Male 79.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 187.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 187.7
Samples: 4

Max nTPM: 196.1
Min nTPM: 173.4
Sample A Male 196.1
Sample B Male 188.9
Sample C Female 173.4
Sample D Female 192.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 9.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 9.3
69015572 Antisense, RP_050315_01_C05, Mouse strain C57BL/6J (56 days, male) 9.3

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