HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni
Consensus:17.5 nTPM
HPA Brain:20.0 nTPM
GTEx:17.5 nTPM
FANTOM5:25.4 Scaled Tags Per Million
Pig:5.3 nTPM
Mouse:1.2 nTPM
Allen mouse:0.0 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA057464
Glial cells Not detected
Neuronal cells Not detected


HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 20.0
Sample id Sample description nTPM
Hippocampus
nTPM: 14.8
1911 Female, age 85, right hemisphere 18.5
2529 Female, age 94, left hemisphere 18.0
1898 Male, age 80, left hemisphere 14.2
2621 Female, age 67, right hemisphere 13.7
1855 Male, age 76, left hemisphere 12.6
2148 Female, age 91, left hemisphere 12.0
Dentate gyrus
nTPM: 14.3
2528 Male, age 74, both hemispheres 18.1
2010 Male, age 76, both hemispheres 17.8
2530 Female, age 94, left hemisphere 17.1
2246 Female, age 85, both hemispheres 12.0
2531 Female, age 67, both hemispheres 10.7
1927 Female, age 91, both hemispheres 10.2
Entorhinal gyrus
nTPM: 15.0
2117 Female, age 91, right hemisphere 24.5
2764 Male, age 80, right hemisphere 18.9
1787 Male, age 76, left hemisphere 13.0
1938 Female, age 85, left hemisphere 11.4
2686 Male, age 75, right hemisphere 11.0
2613 Female, age 94, left hemisphere 10.9
Hippocampus, CA1
nTPM: 12.3
2082 Female, age 91, right hemisphere 14.6
2527 Male, age 74, both hemispheres 14.6
1873 Female, age 85, both hemispheres 13.3
2749 Male, age 80, left hemisphere 9.8
2045 Male, age 76, both hemispheres 9.2
Hippocampus, CA2
nTPM: 15.7
1940 Female, age 85, left hemisphere 21.2
1963 Male, age 80, left hemisphere 18.8
2249 Male, age 74, both hemispheres 17.5
2113 Female, age 91, right hemisphere 15.4
2437 Female, age 94, left hemisphere 12.4
1892 Male, age 76, both hemispheres 8.9
Hippocampus, CA3
nTPM: 12.7
1891 Female, age 85, both hemispheres 22.0
1867 Male, age 76, both hemispheres 15.5
2436 Male, age 74, both hemispheres 11.2
2620 Female, age 94, left hemisphere 10.9
2137 Male, age 80, left hemisphere 10.1
2861 Female, age 67, both hemispheres 6.7
Parahippocampal cortex
nTPM: 13.0
2692 Male, age 74, both hemispheres 20.4
2018 Male, age 76, both hemispheres 17.4
1990 Female, age 91, right hemisphere 16.2
2532 Female, age 72, left hemisphere 14.2
1850 Male, age 80, both hemispheres 13.9
1933 Female, age 85, both hemispheres 12.1
2245 Female, age 91, both hemispheres 10.7
2693 Female, age 94, both hemispheres 10.2
2250 Female, age 67, right hemisphere 8.5
2622 Female, age 67, right hemisphere 5.9
Perirhinal gyrus
nTPM: 9.2
1794 Male, age 80, right hemisphere 10.9
2521 Female, age 94, right hemisphere 10.6
2848 Male, age 76, right hemisphere 9.0
1847 Female, age 91, left hemisphere 8.7
1841 Female, age 85, right hemisphere 7.0
Subiculum
nTPM: 20.0
2042 Male, age 76, both hemispheres 32.6
1901 Male, age 80, both hemispheres 24.4
2619 Male, age 74, both hemispheres 18.6
2729 Female, age 91, right hemisphere 16.3
1977 Female, age 85, both hemispheres 14.4
2438 Female, age 94, left hemisphere 13.8

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 17.5
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 17.5
Samples: 197

Max nTPM: 56.1
Min nTPM: 3.7
Std nTPM: 10.0
Median nTPM: 15.1
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 56.1
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 56.1
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 46.6
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 41.9
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 41.0
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 40.3
GTEX-14PJO-0011-R1b-SM-6AJAK 60-69 years, male 39.9
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 39.7
GTEX-13S7M-0011-R1b-SM-5PNZE 60-69 years, female 39.6
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 39.6
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 39.3
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 25.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 25.4
FF:10153-102I9 76 years, female 26.9
FF:10169-103B7 60 years, female 23.8

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 5.3
Pig sample Sample description nTPM
Subiculum
nTPM: 5.3
Samples: 4

Max nTPM: 6.0
Min nTPM: 3.8
Sample A Female 5.9
Sample B Female 5.6
Sample C Male 6.0
Sample D Male 3.8
Dorsal hippocampus
nTPM: 4.9
Samples: 4

Max nTPM: 5.8
Min nTPM: 4.4
Sample A Female 4.4
Sample B Female 4.6
Sample C Male 5.8
Sample D Male 4.6
Entorhinal cortex
nTPM: 4.2
Samples: 4

Max nTPM: 4.6
Min nTPM: 3.5
Sample A Female 4.3
Sample B Female 3.5
Sample C Male 4.6
Sample D Male 4.2
Ventral hippocampus
nTPM: 5.1
Samples: 4

Max nTPM: 6.0
Min nTPM: 3.9
Sample A Female 3.9
Sample B Female 5.8
Sample C Male 6.0
Sample D Male 4.5

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 1.2
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 1.2
Samples: 4

Max nTPM: 1.5
Min nTPM: 1.0
Sample A Male 1.0
Sample B Male 1.1
Sample C Female 1.5
Sample D Female 1.2
Hippocampal formation
nTPM: 0.9
Samples: 4

Max nTPM: 1.1
Min nTPM: 0.4
Sample A Male 1.1
Sample B Male 0.9
Sample C Female 0.4
Sample D Female 1.1

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.0
70302992 Antisense, RP_050609_01_D02, Mouse strain C57BL/6J (56 days, male) 0.0

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