MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:928.8 nTPM
HPA Brain:324.0 nTPM
GTEx:928.8 nTPM
FANTOM5:67.7 Scaled Tags Per Million
Mouse:244.5 nTPM
Allen mouse:21.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 324.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 313.4
2586 Male, age 75, left hemisphere 466.9
2666 Male, age 74, left hemisphere 387.7
2411 Female, age 72, unknown 328.5
2828 Female, age 72, unknown 313.3
1870 Female, age 42, unknown 305.0
1833 Male, age 53, unknown 287.8
1827 Male, age 72, unknown 276.4
1830 Male, age 51, unknown 271.4
2019 Male, age 18, unknown 261.3
2219 Male, age 76, both hemispheres 235.4
Dorsal raphe nucleus
nTPM: 286.4
2750 Male, age 76, both hemispheres 303.0
2016 Female, age 72, unknown 291.0
1828 Male, age 53, unknown 289.8
2298 Female, age 72, unknown 283.5
2047 Male, age 72, unknown 264.7
Inferior colliculus
nTPM: 264.6
1890 Male, age 53, unknown 272.8
2849 Male, age 72, unknown 266.0
2097 Female, age 72, unknown 265.6
1848 Female, age 42, unknown 254.0
Median raphe nucleus
nTPM: 244.7
2220 Male, age 76, midline 244.7
Periaquaductal grey, anterior
nTPM: 284.8
2502 Female, age 75, unknown 348.0
1795 Male, age 51, unknown 260.6
1947 Male, age 18, unknown 245.9
Periaquaductal grey, dorsal
nTPM: 257.1
1840 Male, age 53, unknown 306.3
2464 Female, age 72, unknown 285.2
1831 Male, age 72, unknown 241.6
2850 Male, age 76, both hemispheres 195.3
Periaquaductal grey, lateral
nTPM: 222.5
2053 Male, age 18, unknown 264.2
2140 Male, age 76, both hemispheres 213.6
2272 Male, age 74, both hemispheres 189.9
Pretectal area
nTPM: 238.9
2825 Male, age 18, unknown 285.6
2316 Male, age 76, right hemisphere 268.7
2407 Male, age 75, both hemispheres 268.0
2007 Male, age 72, unknown 251.6
1815 Male, age 53, unknown 247.5
1816 Male, age 51, unknown 239.4
1817 Female, age 42, unknown 237.6
2224 Female, age 72, unknown 234.8
2667 Female, age 75, unknown 202.7
1944 Female, age 72, unknown 201.5
2273 Male, age 74, both hemispheres 190.6
Red nucleus
nTPM: 313.9
2584 Male, age 75, left hemisphere 389.6
2503 Female, age 72, unknown 367.6
2769 Male, age 72, unknown 337.7
2227 Male, age 72, unknown 331.8
2588 Male, age 74, left hemisphere 325.7
1865 Male, age 51, unknown 321.6
1821 Female, age 72, unknown 320.6
1904 Male, age 53, unknown 313.5
1954 Female, age 42, unknown 285.9
2725 Female, age 75, unknown 268.0
2785 Male, age 18, unknown 266.3
2823 Male, age 76, right hemisphere 238.0
Substantia nigra
nTPM: 324.0
2665 Male, age 74, both hemispheres 394.6
1851 Male, age 51, unknown 391.0
2699 Male, age 18, unknown 370.8
2241 Male, age 72, unknown 346.2
2583 Male, age 75, right hemisphere 329.4
1916 Female, age 42, unknown 323.3
2590 Female, age 75, unknown 306.5
2409 Female, age 72, unknown 279.7
1941 Male, age 53, unknown 252.9
1889 Female, age 72, unknown 245.7
Superior colliculus
nTPM: 286.7
2664 Male, age 75, both hemispheres 409.6
2668 Female, age 75, unknown 323.6
2587 Male, age 74, left hemisphere 322.3
1796 Male, age 53, unknown 284.4
1839 Male, age 51, unknown 274.3
1913 Female, age 42, unknown 269.2
1995 Male, age 72, unknown 266.4
2261 Male, age 18, unknown 265.8
2087 Female, age 72, unknown 227.1
1895 Male, age 76, right hemisphere 224.2
Ventral tegmental area
nTPM: 304.0
1915 Female, age 42, unknown 340.2
2223 Female, age 72, unknown 328.9
2410 Female, age 72, unknown 306.5
2021 Male, age 53, unknown 305.7
1942 Male, age 51, unknown 298.7
2218 Male, age 76, both hemispheres 244.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 928.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 928.8
Samples: 139

Max nTPM: 2873.6
Min nTPM: 371.0
Std nTPM: 347.8
Median nTPM: 870.5
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 2873.6
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 1979.9
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 1927.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 1863.6
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 1670.6
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 1641.6
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 1596.5
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 1545.3
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 1465.7
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 1447.6
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 1443.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 67.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 67.7
FF:10158-103A5 76 years, female 67.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 244.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 244.5
Samples: 4

Max nTPM: 262.4
Min nTPM: 224.2
Sample A Male 262.4
Sample B Male 238.2
Sample C Female 224.2
Sample D Female 253.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 21.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 21.1
77620255 Antisense, RP_070129_04_C07, Mouse strain C57BL/6J (56 days, male) 21.1

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