MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:2.3 nTPM
HPA Brain:10.8 nTPM
GTEx:2.3 nTPM
FANTOM5:6.5 Scaled Tags Per Million
Pig:6.1 nTPM
Mouse:5.2 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 10.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 9.7
2586 Male, age 75, left hemisphere 15.2
2019 Male, age 18, unknown 10.9
2666 Male, age 74, left hemisphere 10.2
2828 Female, age 72, unknown 10.2
2411 Female, age 72, unknown 9.3
1870 Female, age 42, unknown 8.8
2219 Male, age 76, both hemispheres 8.6
1827 Male, age 72, unknown 8.4
1830 Male, age 51, unknown 7.9
1833 Male, age 53, unknown 7.8
Dorsal raphe nucleus
nTPM: 8.4
2750 Male, age 76, both hemispheres 9.7
2047 Male, age 72, unknown 8.4
1828 Male, age 53, unknown 8.3
2016 Female, age 72, unknown 8.2
2298 Female, age 72, unknown 7.5
Inferior colliculus
nTPM: 8.3
2097 Female, age 72, unknown 8.6
1848 Female, age 42, unknown 8.3
1890 Male, age 53, unknown 8.1
2849 Male, age 72, unknown 8.1
Median raphe nucleus
nTPM: 7.7
2220 Male, age 76, midline 7.7
Periaquaductal grey, anterior
nTPM: 10.8
2502 Female, age 75, unknown 11.4
1795 Male, age 51, unknown 11.3
1947 Male, age 18, unknown 9.8
Periaquaductal grey, dorsal
nTPM: 7.1
1840 Male, age 53, unknown 8.1
2464 Female, age 72, unknown 8.1
1831 Male, age 72, unknown 7.4
2850 Male, age 76, both hemispheres 5.0
Periaquaductal grey, lateral
nTPM: 6.9
2272 Male, age 74, both hemispheres 7.8
2053 Male, age 18, unknown 6.5
2140 Male, age 76, both hemispheres 6.4
Pretectal area
nTPM: 8.7
2007 Male, age 72, unknown 14.2
1817 Female, age 42, unknown 10.4
1816 Male, age 51, unknown 9.4
1944 Female, age 72, unknown 8.7
2316 Male, age 76, right hemisphere 8.5
2224 Female, age 72, unknown 8.1
1815 Male, age 53, unknown 7.8
2273 Male, age 74, both hemispheres 7.7
2825 Male, age 18, unknown 7.5
2407 Male, age 75, both hemispheres 7.1
2667 Female, age 75, unknown 6.8
Red nucleus
nTPM: 9.4
2588 Male, age 74, left hemisphere 13.7
2785 Male, age 18, unknown 11.8
2503 Female, age 72, unknown 11.4
2769 Male, age 72, unknown 10.0
1954 Female, age 42, unknown 9.4
2584 Male, age 75, left hemisphere 9.3
2725 Female, age 75, unknown 9.2
2227 Male, age 72, unknown 8.9
1904 Male, age 53, unknown 8.0
1821 Female, age 72, unknown 7.9
1865 Male, age 51, unknown 6.9
2823 Male, age 76, right hemisphere 6.6
Substantia nigra
nTPM: 7.8
1941 Male, age 53, unknown 10.6
2583 Male, age 75, right hemisphere 10.2
1889 Female, age 72, unknown 9.7
1916 Female, age 42, unknown 8.9
2590 Female, age 75, unknown 8.8
1851 Male, age 51, unknown 8.3
2665 Male, age 74, both hemispheres 6.1
2699 Male, age 18, unknown 5.8
2241 Male, age 72, unknown 5.0
2409 Female, age 72, unknown 4.8
Superior colliculus
nTPM: 8.6
2664 Male, age 75, both hemispheres 11.0
2261 Male, age 18, unknown 9.9
1796 Male, age 53, unknown 9.4
2587 Male, age 74, left hemisphere 9.0
2668 Female, age 75, unknown 8.8
1839 Male, age 51, unknown 8.4
1995 Male, age 72, unknown 7.9
1913 Female, age 42, unknown 7.8
1895 Male, age 76, right hemisphere 7.0
2087 Female, age 72, unknown 6.4
Ventral tegmental area
nTPM: 7.8
1942 Male, age 51, unknown 10.1
1915 Female, age 42, unknown 8.5
2410 Female, age 72, unknown 7.6
2021 Male, age 53, unknown 6.9
2218 Male, age 76, both hemispheres 6.9
2223 Female, age 72, unknown 6.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 2.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 2.3
Samples: 139

Max nTPM: 11.4
Min nTPM: 0.0
Std nTPM: 1.6
Median nTPM: 2.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 11.4
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 6.6
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 6.5
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 5.7
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 5.7
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 5.5
GTEX-13N2G-0011-R2a-SM-5MR4Q 60-69 years, male 5.0
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 4.9
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 4.7
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 4.6
GTEX-18464-0011-R2a-SM-731AL 50-59 years, male 4.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 6.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 6.5
FF:10158-103A5 76 years, female 6.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 6.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 5.4
Samples: 4

Max nTPM: 8.8
Min nTPM: 3.2
Sample A Female 8.8
Sample B Female 4.4
Sample C Male 5.1
Sample D Male 3.2
Midbrain
nTPM: 5.2
Samples: 4

Max nTPM: 6.3
Min nTPM: 4.3
Sample A Female 6.3
Sample B Female 4.3
Sample C Male 5.2
Sample D Male 4.8
Periaqueductal gray
nTPM: 4.6
Samples: 3

Max nTPM: 5.0
Min nTPM: 4.0
Sample B Female 4.8
Sample C Male 5.0
Sample D Male 4.0
Superior colliculi
nTPM: 6.1
Samples: 4

Max nTPM: 8.4
Min nTPM: 5.1
Sample A Female 8.4
Sample B Female 5.7
Sample C Male 5.3
Sample D Male 5.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 5.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 5.2
Samples: 4

Max nTPM: 5.6
Min nTPM: 5.0
Sample A Male 5.6
Sample B Male 5.0
Sample C Female 5.0
Sample D Female 5.0

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