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                                  TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
                                  ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
                                  ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
                                  ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
                                  SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
                                  ANTIBODIES
                                  AND
                                  VALIDATION
                                  Dictionary
                                  Small intestine
                                  Tissue proteome
                                  Intestine
                                  SMALL INTESTINE - Expression summary
                                  Protein expression
                                  Small intestinei

                                  On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

                                  Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

                                  If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

                                  h
                                  m
                                  l
                                  n
                                  Glandular cells: High
                                  RNA expressioni

                                  A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

                                  The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

                                  Scroll down to view mRNA expression data in more detail.
                                  Consensus:25.5 nTPM
                                  HPA:17.8 nTPM
                                  GTEx:25.5 nTPM
                                  FANTOM5:7.7 Scaled Tags Per Million

                                  SMALL INTESTINE - Antibody stainingi

                                  Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

                                  Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

                                  Antibody HPA024661
                                  Glandular cells High



                                  SMALL INTESTINE - HPA RNA-seqi

                                  The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

                                  Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
                                  Average nTPM 17.8
                                  overview
                                  Male, age 65
                                  Small intestine sample 232
                                  nTPM: 7.5
                                  Cell types%
                                  Glandular cells:
                                  55

                                  Smooth muscle cells:
                                  5

                                  Other cell types:
                                  40

                                  overview
                                  Male, age 39
                                  Small intestine sample 233
                                  nTPM: 21.1
                                  Cell types%
                                  Glandular cells:
                                  40

                                  Smooth muscle cells:
                                  5

                                  Other cell types:
                                  55

                                  overview
                                  Male, age 68
                                  Small intestine sample 234
                                  nTPM: 22.9
                                  Cell types%
                                  Glandular cells:
                                  30

                                  Smooth muscle cells:
                                  15

                                  Other cell types:
                                  55

                                  N/A
                                  Male, age 85
                                  Small intestine sample 235
                                  nTPM: 19.5

                                  SMALL INTESTINE - GTEx RNA-seqi

                                  RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

                                  Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
                                  Average nTPM 25.5
                                  GTEx sample id Sample description nTPM
                                  10.117.631.43.162.0020406080100120140160180
                                  10.117.631.43.162.0020406080100120140160180
                                  Small Intestine - Terminal Ileum
                                  Average nTPM: 25.5
                                  Samples: 187

                                  Max nTPM: 180.6
                                  Min nTPM: 3.1
                                  Std nTPM: 24.7
                                  Median nTPM: 17.6
                                  GTEX-14PJ3-1326-SM-664O7 50-59 years, male 180.6
                                  GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 136.6
                                  GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 104.5
                                  GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 97.1
                                  GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 93.8
                                  GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 90.3
                                  GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 88.8
                                  GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 80.3
                                  GTEX-XMK1-1826-SM-4B66F 40-49 years, male 78.9
                                  GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 71.7
                                  GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 70.9
                                  GTEX-1C64O-2526-SM-79ONO 60-69 years, male 66.1
                                  GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 65.8
                                  GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 62.0
                                  GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 60.1
                                  GTEX-Y111-2226-SM-4SOJB 50-59 years, male 59.4
                                  GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 57.9
                                  GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 56.2
                                  GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 55.6
                                  GTEX-WFON-1526-SM-4LVMP 40-49 years, male 53.1
                                  GTEX-1192X-2526-SM-59868 50-59 years, male 51.7
                                  GTEX-13O21-1026-SM-5IJDU 50-59 years, male 51.4
                                  GTEX-13111-1426-SM-5DUW3 50-59 years, male 49.1
                                  GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 49.1
                                  GTEX-131XG-1726-SM-5LZUR 50-59 years, female 48.6
                                  GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 48.6
                                  GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 46.5
                                  GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 46.3
                                  GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 46.2
                                  GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 45.4
                                  GTEX-117YX-0326-SM-5GICL 50-59 years, male 45.3
                                  GTEX-1497J-1926-SM-5TDCC 60-69 years, male 45.1
                                  GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 44.7
                                  GTEX-17KNJ-1626-SM-718AL 50-59 years, male 42.5
                                  GTEX-139YR-2226-SM-5IFFW 50-59 years, male 40.7
                                  GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 40.6
                                  GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 40.2
                                  GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 40.0
                                  GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 38.8
                                  GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 37.0
                                  GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 36.6
                                  GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 34.3
                                  GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 34.1
                                  GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 33.2
                                  GTEX-Y114-1426-SM-4TT6W 50-59 years, female 32.4
                                  GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 31.9
                                  GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 31.7
                                  GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 31.1
                                  GTEX-139T6-1026-SM-5IJGC 50-59 years, male 31.0
                                  GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 29.2
                                  GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 29.2
                                  GTEX-13113-1226-SM-5EGHT 60-69 years, female 27.8
                                  GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 27.6
                                  GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 26.5
                                  GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 26.2
                                  GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 26.1
                                  GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 26.0
                                  GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 26.0
                                  GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 25.8
                                  GTEX-14PJN-0826-SM-686ZL 30-39 years, male 25.5
                                  GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 25.0
                                  GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 24.9
                                  GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 24.9
                                  GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 24.7
                                  GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 24.6
                                  GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 23.5
                                  GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 23.5
                                  GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 23.4
                                  GTEX-YFCO-1326-SM-664NV 40-49 years, male 23.3
                                  GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 22.8
                                  GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 22.6
                                  GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 22.3
                                  GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 22.3
                                  GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 22.3
                                  GTEX-X15G-1426-SM-4PQZK 50-59 years, female 22.2
                                  GTEX-145ME-0926-SM-5O9AR 40-49 years, female 22.1
                                  GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 22.0
                                  GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 22.0
                                  GTEX-XBED-1426-SM-4AT4G 60-69 years, male 21.8
                                  GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 21.6
                                  GTEX-ZTSS-0926-SM-59865 40-49 years, male 20.7
                                  GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 20.2
                                  GTEX-144GM-1026-SM-79OKU 20-29 years, male 20.1
                                  GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 19.9
                                  GTEX-WFG7-1726-SM-4LVME 20-29 years, male 19.3
                                  GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 19.2
                                  GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 18.9
                                  GTEX-16A39-1426-SM-6LLI6 30-39 years, female 18.7
                                  GTEX-14PKU-1626-SM-6871C 40-49 years, female 18.5
                                  GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 18.4
                                  GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 18.3
                                  GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 18.2
                                  GTEX-YEC4-1726-SM-4W21E 40-49 years, male 18.0
                                  GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 17.6
                                  GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 17.2
                                  GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 16.9
                                  GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 16.6
                                  GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 16.6
                                  GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 16.4
                                  GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 16.3
                                  GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 16.2
                                  GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 16.0
                                  GTEX-1399R-2026-SM-5K7WN 30-39 years, male 15.6
                                  GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 15.6
                                  GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 15.5
                                  GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 15.5
                                  GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 15.5
                                  GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 15.5
                                  GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 15.4
                                  GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 15.0
                                  GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 14.5
                                  GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 13.6
                                  GTEX-11EQ9-1326-SM-5985X 30-39 years, male 13.5
                                  GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 13.5
                                  GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 13.2
                                  GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 13.2
                                  GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 13.0
                                  GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 12.7
                                  GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 12.5
                                  GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 12.5
                                  GTEX-17HHE-1726-SM-79OKT 50-59 years, male 11.9
                                  GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 11.8
                                  GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 11.6
                                  GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 11.3
                                  GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 11.2
                                  GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 11.1
                                  GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 10.9
                                  GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 10.9
                                  GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 10.8
                                  GTEX-11I78-1126-SM-5A5K5 50-59 years, female 10.7
                                  GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 10.7
                                  GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 10.6
                                  GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 10.6
                                  GTEX-1C475-1426-SM-793CH 40-49 years, female 10.5
                                  GTEX-11TUW-1926-SM-5BC58 60-69 years, male 10.4
                                  GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 10.4
                                  GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 10.3
                                  GTEX-13D11-0726-SM-5LZZB 50-59 years, female 10.2
                                  GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 10.2
                                  GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 10.2
                                  GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 10.1
                                  GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 10.0
                                  GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 10.0
                                  GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 9.9
                                  GTEX-XPVG-1726-SM-4B65W 50-59 years, male 9.5
                                  GTEX-1122O-1326-SM-5H11F 60-69 years, female 9.2
                                  GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 9.2
                                  GTEX-1AMFI-1926-SM-731F2 50-59 years, female 9.2
                                  GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 9.0
                                  GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 9.0
                                  GTEX-14PK6-1626-SM-6871I 70-79 years, female 8.5
                                  GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 8.5
                                  GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 8.4
                                  GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 8.3
                                  GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 8.3
                                  GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 8.2
                                  GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 8.1
                                  GTEX-145LT-1026-SM-5LU9O 40-49 years, male 8.0
                                  GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 7.9
                                  GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 7.4
                                  GTEX-11P82-0826-SM-5P9GU 20-29 years, male 7.3
                                  GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 7.3
                                  GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 7.3
                                  GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 7.1
                                  GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 6.8
                                  GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 6.5
                                  GTEX-111YS-1426-SM-5GID8 60-69 years, male 6.2
                                  GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 6.2
                                  GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 6.2
                                  GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 5.8
                                  GTEX-133LE-1426-SM-5IFH1 20-29 years, female 5.5
                                  GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 5.4
                                  GTEX-1399S-2026-SM-5KM4B 30-39 years, female 5.3
                                  GTEX-14PN3-2026-SM-68729 60-69 years, female 5.1
                                  GTEX-13O61-1326-SM-5KM31 60-69 years, male 5.0
                                  GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 4.6
                                  GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 4.6
                                  GTEX-183FY-1626-SM-793D8 20-29 years, male 4.5
                                  GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 4.5
                                  GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 4.4
                                  GTEX-11P7K-1626-SM-5GU63 30-39 years, male 4.2
                                  GTEX-11DXX-1626-SM-5H11H 60-69 years, female 4.0
                                  GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 3.9
                                  GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 3.8
                                  GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 3.5
                                  GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 3.2
                                  GTEX-131XE-0926-SM-5HL7J 50-59 years, male 3.1
                                  Show allShow less

                                  SMALL INTESTINE - FANTOM5 CAGEi

                                  RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

                                  Max Scaled Tags Per Million 7.7
                                  FANTOM5 sample id Sample description Scaled Tags Per Million
                                  Small intestine
                                  Scaled Tags Per Million: 7.7
                                  FF:10024-101D6 15,40,85 years, mixed 7.7

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                                  The Human Protein Atlas project is funded
                                  by the Knut & Alice Wallenberg Foundation.


                                  contact@proteinatlas.org