BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni
Consensus:27.5 nTPM
HPA Brain:82.8 nTPM
GTEx:27.5 nTPM
FANTOM5:192.0 Scaled Tags Per Million
Pig:128.9 nTPM
Mouse:130.5 nTPM
Allen mouse:3.1 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA051836
Glial cells Not detected
Neuronal cells Low



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 82.8
Sample id Sample description nTPM
Caudate nucleus
nTPM: 58.7
2288 Male, age 75, left hemisphere 67.3
2481 Female, age 94, left hemisphere 66.3
1781 Male, age 74, unknown 60.5
2846 Female, age 79, unknown 60.1
2290 Female, age 72, unknown 59.0
1857 Female, age 85, left hemisphere 56.2
1854 Male, age 80, left hemisphere 55.6
2289 Male, age 61, right hemisphere 44.5
Globus pallidus, externus
nTPM: 78.0
2395 Male, age 75, both hemispheres 91.0
2772 Female, age 79, unknown 88.3
1996 Male, age 80, right hemisphere 78.4
2567 Female, age 72, unknown 67.4
2646 Male, age 61, right hemisphere 65.0
Globus pallidus, internus
nTPM: 82.8
2287 Male, age 75, right hemisphere 102.1
2778 Female, age 91, both hemispheres 88.6
2483 Female, age 94, right hemisphere 86.9
2111 Female, age 85, right hemisphere 86.1
1818 Male, age 74, unknown 77.6
2566 Female, age 72, unknown 71.4
2037 Male, age 80, right hemisphere 66.7
Nucleus accumbens
nTPM: 61.5
2391 Female, age 94, left hemisphere 70.5
2286 Male, age 75, left hemisphere 68.6
2698 Female, age 72, unknown 63.7
1783 Male, age 74, unknown 61.6
1856 Female, age 91, right hemisphere 58.6
1806 Female, age 85, left hemisphere 57.1
2824 Male, age 61, right hemisphere 57.1
2732 Male, age 80, right hemisphere 55.0
Nucleus basalis of Meynert
nTPM: 63.4
2569 Male, age 61, both hemispheres 69.6
2821 Male, age 75, both hemispheres 64.4
2484 Female, age 94, left hemisphere 61.6
2393 Male, age 80, right hemisphere 58.0
Nucleus of the diagonal band
nTPM: 66.7
1812 Female, age 91, both hemispheres 73.4
2775 Male, age 80, right hemisphere 72.4
2029 Male, age 61, right hemisphere 65.9
2195 Female, age 85, both hemispheres 62.4
1979 Male, age 74, unknown 59.4
Putamen
nTPM: 59.8
2647 Male, age 75, left hemisphere 66.7
2482 Female, age 94, left hemisphere 65.2
2466 Female, age 79, unknown 60.9
1829 Male, age 74, unknown 59.0
1937 Female, age 91, right hemisphere 58.9
1838 Male, age 80, right hemisphere 58.0
2489 Female, age 72, unknown 50.3
Septal nuclei
nTPM: 63.4
2031 Female, age 72, unknown 76.2
2394 Male, age 61, left hemisphere 70.0
1960 Male, age 74, unknown 64.3
2009 Female, age 91, both hemispheres 62.6
2199 Male, age 80, right hemisphere 60.0
2629 Female, age 94, right hemisphere 58.2
2059 Female, age 85, both hemispheres 52.2
Stria terminalis, bed nucleus
nTPM: 60.9
1974 Female, age 91, both hemispheres 71.9
2201 Male, age 74, unknown 55.9
2486 Female, age 94, both hemispheres 54.9

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 27.5
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 25.4
Samples: 246

Max nTPM: 46.4
Min nTPM: 18.1
Std nTPM: 3.3
Median nTPM: 25.0
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 46.4
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 39.0
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 36.2
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 36.1
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 34.0
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 33.1
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 32.6
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 32.2
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 32.1
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 31.9
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 31.7
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 26.4
Samples: 246

Max nTPM: 40.8
Min nTPM: 17.9
Std nTPM: 3.8
Median nTPM: 25.8
GTEX-YFC4-0011-R6b-SM-4V6E1 40-49 years, female 40.8
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 40.0
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 39.3
GTEX-1C6WA-0011-R6a-SM-7PBYP 60-69 years, male 39.1
GTEX-ZUA1-0011-R6b-SM-4YCDD 40-49 years, male 36.5
GTEX-QMR6-0011-R6A-SM-32PKP 50-59 years, male 36.0
GTEX-12WSD-0011-R6b-SM-5P9JU 60-69 years, female 35.7
GTEX-ZAB4-0011-R6a-SM-4SOKD 40-49 years, male 35.6
GTEX-11DXW-0011-R6a-SM-DO11N 40-49 years, male 35.4
GTEX-UTHO-0011-R6A-SM-3GIJW 60-69 years, male 34.4
GTEX-13G51-0011-R6b-SM-5LZX4 60-69 years, male 33.8
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Brain - Putamen (basal ganglia)
Average nTPM: 27.5
Samples: 205

Max nTPM: 45.7
Min nTPM: 20.3
Std nTPM: 3.4
Median nTPM: 27.3
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 45.7
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 39.2
GTEX-QMR6-0011-R7A-SM-32PKL 50-59 years, male 37.2
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 36.5
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 36.4
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 36.0
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 35.3
GTEX-1GZ2Q-0011-R7b-SM-9OSWN 40-49 years, male 34.5
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 34.2
GTEX-1MA7X-0011-R7b-SM-EYYWS 60-69 years, male 33.6
GTEX-13G51-0011-R7b-SM-5LZXG 60-69 years, male 33.2
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 192.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 132.5
FF:10164-103B2 76 years, female 132.5
Nucleus accumbens
Scaled Tags Per Million: 143.5
FF:10037-101F1 23-56 years, mixed 143.5
Putamen
Scaled Tags Per Million: 136.6
FF:10176-103C5 60 years, female 136.6
Globus pallidus
Scaled Tags Per Million: 192.0
FF:10175-103C4 60 years, female 241.7
FF:10161-103A8 76 years, female 142.4

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 128.9
Pig sample Sample description nTPM
Caudate
nTPM: 98.5
Samples: 4

Max nTPM: 105.4
Min nTPM: 88.3
Sample A Female 100.3
Sample B Female 88.3
Sample C Male 105.4
Sample D Male 100.0
Putamen
nTPM: 129.0
Samples: 4

Max nTPM: 188.9
Min nTPM: 101.8
Sample A Female 112.8
Sample B Female 101.8
Sample C Male 188.9
Sample D Male 112.3
Septum
nTPM: 113.4
Samples: 4

Max nTPM: 144.0
Min nTPM: 94.4
Sample A Female 117.0
Sample B Female 98.3
Sample C Male 144.0
Sample D Male 94.4
Ventral pallidum
nTPM: 108.5
Samples: 4

Max nTPM: 126.2
Min nTPM: 99.5
Sample A Female 104.6
Sample B Female 103.8
Sample C Male 126.2
Sample D Male 99.5

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 130.5
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 102.0
Samples: 4

Max nTPM: 104.6
Min nTPM: 100.3
Sample A Male 101.9
Sample B Male 104.6
Sample C Female 101.1
Sample D Female 100.3
Septum
nTPM: 130.6
Samples: 4

Max nTPM: 143.8
Min nTPM: 123.2
Sample A Male 126.5
Sample B Male 143.8
Sample C Female 123.2
Sample D Female 128.7
Ventral forebrain
nTPM: 106.7
Samples: 4

Max nTPM: 119.6
Min nTPM: 96.8
Sample A Male 96.8
Sample B Male 119.6
Sample C Female 108.5
Sample D Female 101.9

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 3.1
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 2.7
68076554 Antisense, RP_040923_02_G03, Mouse strain C57BL/6J (56 days, male) 4.5
70812942 Antisense, RP_050712_02_H02, Mouse strain C57BL/6J (56 days, male) 0.8
Pallidum
Expression energy: 3.1
68076554 Antisense, RP_040923_02_G03, Mouse strain C57BL/6J (56 days, male) 5.9
70812942 Antisense, RP_050712_02_H02, Mouse strain C57BL/6J (56 days, male) 0.3

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