MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:11.7 nTPM
HPA Brain:58.5 nTPM
GTEx:11.7 nTPM
FANTOM5:5.0 Scaled Tags Per Million
Pig:21.0 nTPM
Mouse:40.0 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 58.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 25.1
1870 Female, age 42, unknown 41.8
2586 Male, age 75, left hemisphere 37.6
2411 Female, age 72, unknown 34.6
1827 Male, age 72, unknown 29.3
1833 Male, age 53, unknown 26.7
2666 Male, age 74, left hemisphere 22.4
1830 Male, age 51, unknown 20.8
2219 Male, age 76, both hemispheres 19.7
2828 Female, age 72, unknown 14.7
2019 Male, age 18, unknown 3.5
Dorsal raphe nucleus
nTPM: 45.8
2047 Male, age 72, unknown 66.3
2298 Female, age 72, unknown 64.3
2750 Male, age 76, both hemispheres 38.9
1828 Male, age 53, unknown 35.8
2016 Female, age 72, unknown 23.6
Inferior colliculus
nTPM: 35.5
1848 Female, age 42, unknown 53.3
2849 Male, age 72, unknown 45.6
1890 Male, age 53, unknown 23.1
2097 Female, age 72, unknown 20.1
Median raphe nucleus
nTPM: 58.5
2220 Male, age 76, midline 58.5
Periaquaductal grey, anterior
nTPM: 46.9
1947 Male, age 18, unknown 53.6
1795 Male, age 51, unknown 53.1
2502 Female, age 75, unknown 33.8
Periaquaductal grey, dorsal
nTPM: 34.3
1840 Male, age 53, unknown 47.4
2850 Male, age 76, both hemispheres 39.8
2464 Female, age 72, unknown 25.2
1831 Male, age 72, unknown 24.8
Periaquaductal grey, lateral
nTPM: 30.0
2053 Male, age 18, unknown 42.9
2140 Male, age 76, both hemispheres 27.0
2272 Male, age 74, both hemispheres 20.0
Pretectal area
nTPM: 22.3
2825 Male, age 18, unknown 60.8
2224 Female, age 72, unknown 49.3
2316 Male, age 76, right hemisphere 26.0
1944 Female, age 72, unknown 24.9
2273 Male, age 74, both hemispheres 16.9
2407 Male, age 75, both hemispheres 16.1
2667 Female, age 75, unknown 16.0
1816 Male, age 51, unknown 13.9
1815 Male, age 53, unknown 11.0
2007 Male, age 72, unknown 6.1
1817 Female, age 42, unknown 3.7
Red nucleus
nTPM: 9.2
2584 Male, age 75, left hemisphere 22.6
2588 Male, age 74, left hemisphere 14.6
2725 Female, age 75, unknown 13.9
2769 Male, age 72, unknown 10.6
2227 Male, age 72, unknown 9.2
2503 Female, age 72, unknown 8.0
1865 Male, age 51, unknown 5.9
2823 Male, age 76, right hemisphere 5.8
1954 Female, age 42, unknown 5.4
1821 Female, age 72, unknown 5.2
1904 Male, age 53, unknown 5.1
2785 Male, age 18, unknown 3.8
Substantia nigra
nTPM: 17.0
2241 Male, age 72, unknown 35.3
2665 Male, age 74, both hemispheres 20.7
2590 Female, age 75, unknown 20.2
2409 Female, age 72, unknown 19.2
2583 Male, age 75, right hemisphere 15.8
2699 Male, age 18, unknown 15.5
1851 Male, age 51, unknown 11.7
1889 Female, age 72, unknown 11.5
1916 Female, age 42, unknown 10.0
1941 Male, age 53, unknown 10.0
Superior colliculus
nTPM: 22.4
1839 Male, age 51, unknown 35.6
2261 Male, age 18, unknown 34.3
1796 Male, age 53, unknown 33.8
2664 Male, age 75, both hemispheres 25.9
1895 Male, age 76, right hemisphere 24.6
2587 Male, age 74, left hemisphere 18.6
2087 Female, age 72, unknown 16.3
1913 Female, age 42, unknown 14.0
2668 Female, age 75, unknown 13.7
1995 Male, age 72, unknown 7.2
Ventral tegmental area
nTPM: 30.3
2021 Male, age 53, unknown 57.8
1942 Male, age 51, unknown 31.5
2218 Male, age 76, both hemispheres 26.6
1915 Female, age 42, unknown 26.3
2223 Female, age 72, unknown 22.3
2410 Female, age 72, unknown 17.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 11.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 11.7
Samples: 139

Max nTPM: 32.9
Min nTPM: 1.8
Std nTPM: 4.8
Median nTPM: 11.0
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 32.9
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 27.0
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 25.7
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 23.8
GTEX-1IKJJ-0011-R2b-SM-ARZLJ 60-69 years, male 23.1
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 19.8
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 19.3
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 19.1
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 18.9
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 18.8
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 18.3
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 5.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 5.0
FF:10158-103A5 76 years, female 5.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 21.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 21.0
Samples: 4

Max nTPM: 32.2
Min nTPM: 5.0
Sample A Female 31.1
Sample B Female 15.7
Sample C Male 32.2
Sample D Male 5.0
Midbrain
nTPM: 8.7
Samples: 4

Max nTPM: 17.3
Min nTPM: 2.8
Sample A Female 2.9
Sample B Female 17.3
Sample C Male 2.8
Sample D Male 11.9
Periaqueductal gray
nTPM: 13.3
Samples: 3

Max nTPM: 15.0
Min nTPM: 12.4
Sample B Female 12.6
Sample C Male 15.0
Sample D Male 12.4
Superior colliculi
nTPM: 12.6
Samples: 4

Max nTPM: 25.6
Min nTPM: 2.8
Sample A Female 17.8
Sample B Female 2.8
Sample C Male 4.1
Sample D Male 25.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 40.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 40.1
Samples: 4

Max nTPM: 42.4
Min nTPM: 37.9
Sample A Male 37.9
Sample B Male 41.3
Sample C Female 42.4
Sample D Female 38.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
515 Antisense, RP_040227_01_02, Mouse strain C57BL/6J (56 days, male) 0.1
516 Antisense, RP_040227_01_02, Mouse strain C57BL/6J (56 days, male) 0.0

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org