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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Ganglion cells :
Not detected
Inner nuclear layer:
Not detected
Inner plexiform layer:
Not detected
Limiting membrane:
Not detected
Nerve fiber layer:
Not detected
Outer plexiform layer:
Not detected
Photoreceptor cells:
Medium
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
280.3
nTPM
GTEx:
280.3
nTPM
FANTOM5:
185.7
Scaled Tags Per Million
Pig:
74.0
nTPM
Mouse:
230.4
nTPM
RETINA - Extended tissue profilei
For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.
, antibody HPA031131
Photoreceptor cells
Medium
Limiting membrane
Not detected
Outer plexiform layer
Not detected
Inner nuclear layer
Not detected
Inner plexiform layer
Not detected
Ganglion cells
Not detected
Nerve fiber layer
Not detected
RETINA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM
280.3
GTEx sample id
Sample description
nTPM
Retina Average nTPM: 280.3
Samples: 105
Max nTPM: 517.9
Min nTPM: 134.1
Std nTPM: 78.6
Median nTPM:
352_1
62 years, male
517.9
355_1
70 years, female
502.6
356_1
87 years, female
498.3
319_1
81 years, male
437.5
375_1
74 years, female
435.7
218_1
71 years, female
408.3
350_1
84 years, female
402.4
347_1
72 years, male
399.8
394_1
75 years, female
390.0
425_1
59 years, female
381.6
414_1
84 years, female
381.2
172_1
72 years, female
379.7
354_1
81 years, female
374.9
386_1
76 years, male
371.0
384_1
83 years, male
363.0
353_1
82 years, female
362.6
163_1
78 years, male
360.9
246_1
77 years, male
356.8
389_1
86 years, female
355.6
377_1
82 years, female
354.4
447_1
81 years, male
354.3
99_1
64 years, male
353.5
490_1
67 years, female
351.7
42_1
85 years, male
343.2
243_1
75 years, male
341.5
468_1
89 years, male
339.8
321_1
62 years, female
339.6
349_1
83 years, male
334.8
415_1
77 years, female
334.8
265_1
87 years, male
330.6
254_1
77 years, female
321.5
266_1
85 years, male
316.4
351_1
91 years, male
313.5
35_1
74 years, female
309.9
177_1
74 years, male
307.6
404_1
82 years, female
305.7
6_1
73 years, female
304.3
396_1
62 years, male
302.7
307_1
66 years, female
301.0
237_1
82 years, male
300.5
379_1
60 years, male
292.4
318_1
68 years, male
291.4
526_1
61 years, male
290.9
491_1
89 years, female
284.2
229_1
69 years, female
276.8
292_1
71 years, male
274.8
315_1
62 years, female
272.9
286_1
68 years, female
270.5
503_1
68 years, male
270.5
480_1
63 years, male
269.9
466_1
57 years, female
268.8
413_1
59 years, female
263.9
499_1
55 years, female
260.8
335_1
73 years, female
259.9
317_1
60 years, male
257.6
291_1
76 years, male
257.0
173_1
67 years, male
255.8
217_1
76 years, male
255.3
32_1
67 years, male
253.3
517_1
88 years, male
249.9
109_1
81 years, female
248.5
126_1
63 years, male
247.9
189_1
76 years, male
246.3
120_1
70 years, female
245.8
115_1
83 years, male
244.9
251_1
78 years, male
244.9
293_1
68 years, female
242.5
142_1
61 years, female
242.3
41_1
94 years, female
241.5
324_1
76 years, male
240.9
405_1
91 years, male
238.2
162_1
79 years, female
235.5
9_1
66 years, female
234.4
406_1
79 years, male
230.4
89_1
63 years, male
229.4
153_1
70 years, female
229.1
295_1
61 years, female
226.2
320_1
89 years, female
226.0
313_1
79 years, female
224.6
348_1
84 years, male
223.8
322_1
76 years, male
221.8
376_1
75 years, female
219.0
452_1
88 years, female
218.1
4_1
88 years, female
214.9
518_1
75 years, female
211.1
139_1
64 years, female
210.0
316_1
62 years, male
207.6
311_1
78 years, male
204.7
119_1
70 years, female
202.4
264_1
73 years, female
201.9
145_1
84 years, male
201.4
314_1
67 years, male
197.9
117_1
61 years, male
195.5
149_1
88 years, male
195.0
18_1
88 years, male
194.9
17_1
71 years, male
190.6
2_1
77 years, female
187.4
506_1
65 years, male
186.6
137_1
83 years, male
175.1
288_1
66 years, female
174.5
81_1
67 years, male
166.9
495_1
57 years, female
162.3
43_1
64 years, female
154.7
501_1
88 years, male
144.8
308_1
70 years, female
134.1
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RETINA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.