HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
RNA expressioni
Consensus:22.5 nTPM
HPA Brain:45.8 nTPM
GTEx:22.5 nTPM
FANTOM5:12.0 Scaled Tags Per Million
Pig:24.2 nTPM
Mouse:53.5 nTPM
Allen mouse:2.8 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA036100Antibody HPA036101
Glial cells Not detectedNot detected
Neuronal cells LowMedium




HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 45.8
Sample id Sample description nTPM
Hippocampus
nTPM: 40.4
1898 Male, age 80, left hemisphere 49.9
2148 Female, age 91, left hemisphere 43.7
1855 Male, age 76, left hemisphere 41.2
1911 Female, age 85, right hemisphere 39.9
2621 Female, age 67, right hemisphere 35.3
2529 Female, age 94, left hemisphere 32.5
Dentate gyrus
nTPM: 43.1
1927 Female, age 91, both hemispheres 50.1
2010 Male, age 76, both hemispheres 48.0
2528 Male, age 74, both hemispheres 48.0
2246 Female, age 85, both hemispheres 41.1
2531 Female, age 67, both hemispheres 37.3
2530 Female, age 94, left hemisphere 34.2
Entorhinal gyrus
nTPM: 30.7
2764 Male, age 80, right hemisphere 34.7
1938 Female, age 85, left hemisphere 31.9
2117 Female, age 91, right hemisphere 31.1
1787 Male, age 76, left hemisphere 30.3
2686 Male, age 75, right hemisphere 28.1
2613 Female, age 94, left hemisphere 28.0
Hippocampus, CA1
nTPM: 45.8
2749 Male, age 80, left hemisphere 63.0
1873 Female, age 85, both hemispheres 52.9
2045 Male, age 76, both hemispheres 43.6
2527 Male, age 74, both hemispheres 36.7
2082 Female, age 91, right hemisphere 32.5
Hippocampus, CA2
nTPM: 37.4
1963 Male, age 80, left hemisphere 49.2
1892 Male, age 76, both hemispheres 41.8
1940 Female, age 85, left hemisphere 35.0
2249 Male, age 74, both hemispheres 34.5
2113 Female, age 91, right hemisphere 34.4
2437 Female, age 94, left hemisphere 29.5
Hippocampus, CA3
nTPM: 39.0
2137 Male, age 80, left hemisphere 48.3
2436 Male, age 74, both hemispheres 41.2
1891 Female, age 85, both hemispheres 40.2
1867 Male, age 76, both hemispheres 36.0
2620 Female, age 94, left hemisphere 34.5
2861 Female, age 67, both hemispheres 33.8
Parahippocampal cortex
nTPM: 36.1
2693 Female, age 94, both hemispheres 41.8
1933 Female, age 85, both hemispheres 39.6
2250 Female, age 67, right hemisphere 39.0
2532 Female, age 72, left hemisphere 37.0
2018 Male, age 76, both hemispheres 36.9
2692 Male, age 74, both hemispheres 34.7
1990 Female, age 91, right hemisphere 34.6
1850 Male, age 80, both hemispheres 33.7
2245 Female, age 91, both hemispheres 33.0
2622 Female, age 67, right hemisphere 31.0
Perirhinal gyrus
nTPM: 36.5
2521 Female, age 94, right hemisphere 44.1
1841 Female, age 85, right hemisphere 39.0
1794 Male, age 80, right hemisphere 35.5
1847 Female, age 91, left hemisphere 32.2
2848 Male, age 76, right hemisphere 31.9
Subiculum
nTPM: 35.7
2729 Female, age 91, right hemisphere 43.2
1901 Male, age 80, both hemispheres 38.8
2042 Male, age 76, both hemispheres 36.0
1977 Female, age 85, both hemispheres 35.7
2619 Male, age 74, both hemispheres 34.7
2438 Female, age 94, left hemisphere 25.9

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 22.5
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 22.5
Samples: 197

Max nTPM: 67.1
Min nTPM: 10.9
Std nTPM: 6.3
Median nTPM: 21.9
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 67.1
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 42.2
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 40.2
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 40.0
GTEX-11GS4-0011-R1a-SM-DO129 60-69 years, male 37.2
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 36.7
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 36.6
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 35.9
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 35.9
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 35.4
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 33.2
Show allShow less

HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 12.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 12.0
FF:10169-103B7 60 years, female 12.4
FF:10153-102I9 76 years, female 11.7

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 24.2
Pig sample Sample description nTPM
Subiculum
nTPM: 18.9
Samples: 4

Max nTPM: 19.9
Min nTPM: 17.5
Sample A Female 19.5
Sample B Female 19.9
Sample C Male 18.7
Sample D Male 17.5
Dorsal hippocampus
nTPM: 24.2
Samples: 4

Max nTPM: 26.0
Min nTPM: 20.3
Sample A Female 26.0
Sample B Female 24.6
Sample C Male 20.3
Sample D Male 25.9
Entorhinal cortex
nTPM: 15.5
Samples: 4

Max nTPM: 17.6
Min nTPM: 13.5
Sample A Female 16.3
Sample B Female 17.6
Sample C Male 14.7
Sample D Male 13.5
Ventral hippocampus
nTPM: 21.9
Samples: 4

Max nTPM: 27.8
Min nTPM: 19.3
Sample A Female 27.8
Sample B Female 20.8
Sample C Male 19.5
Sample D Male 19.3

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 53.5
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 36.8
Samples: 4

Max nTPM: 44.6
Min nTPM: 29.6
Sample A Male 29.6
Sample B Male 31.3
Sample C Female 44.6
Sample D Female 41.6
Hippocampal formation
nTPM: 53.5
Samples: 4

Max nTPM: 59.4
Min nTPM: 49.5
Sample A Male 50.2
Sample B Male 54.8
Sample C Female 59.4
Sample D Female 49.5

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 2.8
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 2.8
73584801 Antisense, RP_051206_01_B10, Mouse strain C57BL/6J (56 days, male) 2.8
74357550 Antisense, RP_051206_01_B10, Mouse strain C57BL/6J (56 days, male) 1.5

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org